Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SUB_RS09225 Genome accession   NC_012004
Coordinates   1838364..1839458 (+) Length   364 a.a.
NCBI ID   WP_015912145.1    Uniprot ID   B9DWE6
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833364..1844458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS09200 (SUB1855) pgsA 1833423..1833965 (-) 543 WP_015912140.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SUB_RS09205 (SUB1856) - 1833975..1835018 (-) 1044 WP_015912141.1 helix-turn-helix domain-containing protein -
  SUB_RS09210 (SUB1857) yfmH 1835069..1836352 (-) 1284 WP_015912142.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SUB_RS09215 (SUB1858) yfmF 1836349..1837596 (-) 1248 WP_015912143.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SUB_RS09220 (SUB1859) yaaA 1837972..1838361 (+) 390 WP_015912144.1 S4 domain-containing protein YaaA -
  SUB_RS09225 (SUB1860) recF 1838364..1839458 (+) 1095 WP_015912145.1 DNA replication/repair protein RecF Machinery gene
  SUB_RS09230 (SUB1861) - 1839470..1840333 (-) 864 WP_015912146.1 GRP family sugar transporter -
  SUB_RS09235 (SUB1862) guaB 1840521..1842002 (-) 1482 WP_015912147.1 IMP dehydrogenase -
  SUB_RS09240 (SUB1863) trpS 1842244..1843266 (-) 1023 WP_015912148.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41665.77 Da        Isoelectric Point: 8.9968

>NTDB_id=29723 SUB_RS09225 WP_015912145.1 1838364..1839458(+) (recF) [Streptococcus uberis 0140J]
MWIKELQLRNFRNYGTVDTEFSPGLNVFIGNNAQGKTNFLEAIYFLALTRSHRTRTDKELIQFSKNNLQLIGKLNRISGA
LSLELQLSDKGRITKINALKQARLSDYIGTMMVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLSDLSNYNYVLKQR
NTYLKTISTINSDFLSVLDEQLADYGSKVIKHRIDFIGELTREANKHHEAISNGLESLIITYESSVTQQDHQTIKEAFLL
NLQKNRQRDIFKKNTSIGPHRDDIHFFINDMNANFASQGQHRSLILSLKMAEVSLMKEMTGDNPILLLDDVMSELDNTRQ
IKLLETVINENVQTFITTTSLDHLLHLPDKIKTFHVNQGTLKAD

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=29723 SUB_RS09225 WP_015912145.1 1838364..1839458(+) (recF) [Streptococcus uberis 0140J]
ATGTGGATTAAAGAACTTCAACTTAGAAATTTTCGCAATTATGGTACAGTTGATACTGAATTTTCTCCAGGATTAAATGT
TTTCATTGGAAATAACGCCCAAGGGAAAACCAATTTTCTTGAGGCTATCTATTTTTTAGCACTTACACGAAGTCACAGAA
CAAGAACTGATAAAGAACTAATTCAATTTTCCAAAAATAATTTACAGTTAATTGGCAAATTGAACCGAATCAGTGGAGCT
TTAAGTTTAGAATTACAATTATCTGACAAAGGTCGTATAACAAAAATAAATGCCTTAAAACAAGCTCGACTTTCTGATTA
TATTGGAACGATGATGGTTGTTCTCTTTGCACCAGAAGATTTACAACTTATCAAAGGTGCTCCTAGTCTAAGACGAAAGT
TTATTGATATAGATTTAGGTCAAATAAAACCCATTTATTTATCAGATTTATCCAACTATAACTATGTTTTAAAGCAACGT
AATACTTATTTAAAAACAATCTCAACTATCAATTCTGACTTTTTATCTGTATTGGATGAACAATTAGCCGATTATGGAAG
CAAAGTTATTAAACATCGAATAGATTTTATTGGAGAGCTCACCCGTGAAGCTAATAAACATCATGAAGCAATCTCAAATG
GACTTGAATCTTTAATAATCACTTATGAATCTTCAGTCACTCAACAAGATCATCAAACCATTAAAGAAGCCTTTCTACTG
AATCTTCAAAAAAATAGACAAAGAGATATATTTAAAAAGAACACTAGTATTGGACCTCATCGTGATGATATTCACTTTTT
TATCAATGACATGAATGCCAATTTTGCTAGTCAAGGCCAACATAGAAGTCTTATTCTTTCATTAAAAATGGCTGAAGTTA
GTTTGATGAAAGAAATGACTGGAGATAATCCTATATTATTGCTTGATGATGTTATGAGTGAACTAGATAATACCAGACAA
ATAAAATTACTTGAAACTGTCATAAATGAAAATGTTCAAACCTTTATTACGACAACAAGTTTAGATCACCTTCTTCATCT
GCCAGATAAAATTAAAACTTTTCACGTCAATCAGGGCACATTAAAAGCAGACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

63.231

98.626

0.624
  recF Bacillus subtilis subsp. subtilis str. 168

43.343

96.978

0.42

Multiple sequence alignment