Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   EQH23_RS09635 Genome accession   NZ_CP035257
Coordinates   1892837..1893736 (-) Length   299 a.a.
NCBI ID   WP_000904833.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901928     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1887837..1898736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH23_RS09620 (EQH23_10205) - 1888406..1890436 (-) 2031 WP_000825257.1 bacteriocin-associated integral membrane family protein -
  EQH23_RS09625 (EQH23_10210) - 1890513..1890809 (-) 297 WP_000815392.1 lactococcin 972 family bacteriocin -
  EQH23_RS09630 (EQH23_10220) - 1891298..1892644 (+) 1347 WP_001808790.1 IS1380-like element ISSpn5 family transposase -
  EQH23_RS09635 (EQH23_10225) comR 1892837..1893736 (-) 900 WP_000904833.1 helix-turn-helix transcriptional regulator Regulator
  EQH23_RS09640 (EQH23_10230) rnmV 1893808..1894368 (-) 561 WP_000664448.1 ribonuclease M5 -
  EQH23_RS09645 (EQH23_10235) - 1894368..1895141 (-) 774 WP_000575638.1 TatD family hydrolase -
  EQH23_RS09650 (EQH23_10245) - 1895446..1896417 (-) 972 Protein_1912 DUF1542 domain-containing protein -
  EQH23_RS09655 (EQH23_10255) rpmH 1896623..1896757 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  EQH23_RS09660 (EQH23_10260) - 1896902..1898116 (-) 1215 WP_000666469.1 pyridoxal phosphate-dependent aminotransferase -
  EQH23_RS09665 (EQH23_10265) - 1898272..1898566 (-) 295 Protein_1915 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35335.16 Da        Isoelectric Point: 4.8989

>NTDB_id=297124 EQH23_RS09635 WP_000904833.1 1892837..1893736(-) (comR) [Streptococcus pneumoniae strain TVO_1901928]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEAYSINDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=297124 EQH23_RS09635 WP_000904833.1 1892837..1893736(-) (comR) [Streptococcus pneumoniae strain TVO_1901928]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATTATAGAAAAAGAAGCTTATTCAATAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis P1/7

38.144

97.324

0.371
  comR Streptococcus suis 05ZYH33

38.144

97.324

0.371
  comR Streptococcus suis D9

36.12

100

0.361