Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NMCC_RS02170 Genome accession   NC_010120
Coordinates   433041..433640 (-) Length   199 a.a.
NCBI ID   WP_002214520.1    Uniprot ID   Q4W563
Organism   Neisseria meningitidis 053442     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428041..438640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS02155 (NMCC_0416) pilQ 429526..431811 (-) 2286 WP_002219789.1 type IV pilus secretin PilQ Machinery gene
  NMCC_RS02160 (NMCC_0417) pilP 431830..432375 (-) 546 WP_012221313.1 pilus assembly protein PilP Machinery gene
  NMCC_RS02165 (NMCC_0418) - 432393..433040 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  NMCC_RS02170 (NMCC_0419) pilN 433041..433640 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  NMCC_RS02175 (NMCC_0420) pilM 433643..434758 (-) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  NMCC_RS02180 (NMCC_0421) - 434910..437306 (+) 2397 WP_002219786.1 penicillin-binding protein 1A -
  NMCC_RS02185 (NMCC_0422) yihA 437427..438056 (-) 630 WP_002217904.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22257.48 Da        Isoelectric Point: 9.5493

>NTDB_id=29639 NMCC_RS02170 WP_002214520.1 433041..433640(-) (pilN) [Neisseria meningitidis 053442]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=29639 NMCC_RS02170 WP_002214520.1 433041..433640(-) (pilN) [Neisseria meningitidis 053442]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4W563

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

100

100

1

Multiple sequence alignment