Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NMCC_RS02160 Genome accession   NC_010120
Coordinates   431830..432375 (-) Length   181 a.a.
NCBI ID   WP_012221313.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426830..437375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS02150 (NMCC_0415) - 427836..428348 (-) 513 WP_002222978.1 shikimate kinase -
  NMCC_RS02155 (NMCC_0416) pilQ 429526..431811 (-) 2286 WP_002219789.1 type IV pilus secretin PilQ Machinery gene
  NMCC_RS02160 (NMCC_0417) pilP 431830..432375 (-) 546 WP_012221313.1 pilus assembly protein PilP Machinery gene
  NMCC_RS02165 (NMCC_0418) - 432393..433040 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  NMCC_RS02170 (NMCC_0419) pilN 433041..433640 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  NMCC_RS02175 (NMCC_0420) pilM 433643..434758 (-) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  NMCC_RS02180 (NMCC_0421) - 434910..437306 (+) 2397 WP_002219786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=29638 NMCC_RS02160 WP_012221313.1 431830..432375(-) (pilP) [Neisseria meningitidis 053442]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEILPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=29638 NMCC_RS02160 WP_012221313.1 431830..432375(-) (pilP) [Neisseria meningitidis 053442]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCCTACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCACAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

99.448

100

0.994

Multiple sequence alignment