Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   EQH33_RS09615 Genome accession   NZ_CP035247
Coordinates   1884815..1885309 (-) Length   164 a.a.
NCBI ID   WP_224781507.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901940     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1879815..1890309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH33_RS09585 (EQH33_10140) - 1880124..1880999 (+) 876 WP_000669493.1 substrate-binding domain-containing protein -
  EQH33_RS09590 (EQH33_10145) pstC 1881117..1881980 (+) 864 WP_000165892.1 phosphate ABC transporter permease subunit PstC -
  EQH33_RS09595 (EQH33_10150) pstA 1881973..1882788 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  EQH33_RS09600 (EQH33_10155) pstB 1882790..1883542 (+) 753 WP_000536449.1 phosphate ABC transporter ATP-binding protein PstB -
  EQH33_RS09605 (EQH33_10160) phoU 1883557..1884207 (+) 651 WP_001245783.1 phosphate signaling complex protein PhoU -
  EQH33_RS09610 (EQH33_10165) - 1884248..1884700 (+) 453 Protein_1870 transposase -
  EQH33_RS09615 (EQH33_10170) comR 1884815..1885309 (-) 495 WP_224781507.1 helix-turn-helix transcriptional regulator Regulator
  EQH33_RS09620 (EQH33_10175) - 1885467..1886483 (+) 1017 WP_000415107.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  EQH33_RS09625 (EQH33_10180) galU 1886505..1887404 (+) 900 WP_000202226.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EQH33_RS09630 (EQH33_10185) - 1887471..1888148 (-) 678 WP_000658498.1 rhomboid family intramembrane serine protease -
  EQH33_RS09635 (EQH33_10190) - 1888132..1888671 (-) 540 WP_000834342.1 5-formyltetrahydrofolate cyclo-ligase -
  EQH33_RS09640 (EQH33_10195) - 1888683..1889813 (-) 1131 WP_000885069.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19780.85 Da        Isoelectric Point: 4.8839

>NTDB_id=296283 EQH33_RS09615 WP_224781507.1 1884815..1885309(-) (comR) [Streptococcus pneumoniae strain TVO_1901940]
MIQYMLIIEVNNSGSSCRLREFGEKIKRLRLAKKISRSEFCGDESELSIRQLIRIENGESRPILTKLKYIAERLEVEDYK
LMPSYIELDKEYLELKYFLMRTPTYEDETIAQKKESVFDKIFEEYYDRLPEEERFIIPNYSYLALTNYTVQKLPEKLVEI
LSFW

Nucleotide


Download         Length: 495 bp        

>NTDB_id=296283 EQH33_RS09615 WP_224781507.1 1884815..1885309(-) (comR) [Streptococcus pneumoniae strain TVO_1901940]
TTGATTCAGTATATGCTTATAATAGAGGTAAACAACTCAGGAAGTTCTTGTAGGTTGCGAGAGTTTGGCGAAAAAATTAA
AAGATTACGTTTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTA
GAATTGAAAATGGAGAATCCAGACCAATACTAACAAAGTTAAAATATATTGCTGAACGTTTGGAGGTTGAAGATTACAAG
TTGATGCCAAGTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGA
TGAAACTATCGCCCAAAAGAAAGAGAGTGTTTTTGATAAGATTTTTGAAGAGTATTATGATAGGCTACCTGAGGAAGAAA
GATTTATCATCCCAAATTATTCATATCTGGCACTAACGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATA
CTGTCCTTCTGGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(90-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

55.833

73.171

0.409
  comR Streptococcus pyogenes MGAS315

54.167

73.171

0.396
  comR Streptococcus mutans UA159

52.5

73.171

0.384