Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EQH34_RS06705 Genome accession   NZ_CP035246
Coordinates   1349552..1350274 (-) Length   240 a.a.
NCBI ID   WP_001820349.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901941     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344552..1355274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH34_RS06695 (EQH34_07130) - 1347126..1348292 (-) 1167 WP_000521372.1 MalY/PatB family protein -
  EQH34_RS06700 (EQH34_07135) - 1348300..1349394 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  EQH34_RS06705 rcrP 1349552..1350274 (-) 723 WP_001820349.1 ABC transporter ATP-binding protein Regulator
  EQH34_RS06710 - 1350461..1350982 (-) 522 Protein_1344 ABC transporter transmembrane domain-containing protein -
  EQH34_RS06715 (EQH34_07145) - 1351000..1351233 (-) 234 WP_000768985.1 hypothetical protein -
  EQH34_RS06720 (EQH34_07150) amiA 1351405..1353363 (-) 1959 WP_000748875.1 peptide ABC transporter substrate-binding protein Regulator
  EQH34_RS06725 (EQH34_07155) - 1353567..1355189 (-) 1623 WP_000017792.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27150.04 Da        Isoelectric Point: 5.0452

>NTDB_id=296121 EQH34_RS06705 WP_001820349.1 1349552..1350274(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901941]
MNFNHVYFGYDENRPVLKDIICSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=296121 EQH34_RS06705 WP_001820349.1 1349552..1350274(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901941]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTATTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371
  rcrQ Streptococcus mutans UA159

36.667

100

0.367
  comA Streptococcus mitis SK321

37.607

97.5

0.367
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis NCTC 12261

37.179

97.5

0.362