Detailed information NTG0295970

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DM292_RS01035
• Genome accession: NZ_CP029772
• Coordinates: 234399..235736 (-)
• Length: 445 a.a.
• NCBI ID: WP_110775886.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain R2A2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 229399..240736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DM292_RS01025 (DM292_01025)	-	231455..233050 (-)	1596	WP_110775884.1	PleD family two-component system response regulator	-
DM292_RS01030 (DM292_01030)	-	233265..234320 (+)	1056	WP_110775885.1	DUF2333 family protein	-
DM292_RS01035 (DM292_01035)	pilR	234399..235736 (-)	1338	WP_110775886.1	sigma-54 dependent transcriptional regulator	Regulator
DM292_RS01040 (DM292_01040)	pilS	235863..237458 (-)	1596	WP_063541895.1	PAS domain-containing sensor histidine kinase	Regulator
DM292_RS01045 (DM292_01045)	-	237448..237681 (-)	234	WP_110775887.1	PP0621 family protein	-
DM292_RS01050 (DM292_01050)	-	237802..238791 (-)	990	WP_063541899.1	outer membrane protein assembly factor BamD	-
DM292_RS01055 (DM292_01055)	rluD	238995..239969 (+)	975	WP_063541901.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
DM292_RS01060 (DM292_01060)	pgeF	239966..240703 (+)	738	WP_110775888.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49541.93 Da
• Isoelectric Point: 6.2057

>NTDB_id=295970 DM292_RS01035 WP_110775886.1 234399..235736(-) (pilR) [Stutzerimonas frequens strain R2A2]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLDLVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAESPVDNRLLGSSPPMKVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSDKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADAM
LRRLAQECGDSSARLHPDALAKLENYRFPGNVRELENMLERAYTLCEDDEIKAGDLRLADSPGLSESGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=295970 DM292_RS01035 WP_110775886.1 234399..235736(-) (pilR) [Stutzerimonas frequens strain R2A2]
ATGACCGCGCGCCAGAAAGCATTGATCATCGATGACGAGCCCGATATCCGCGAGTTGCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGATACCCGCAGCGCCCGCAACCTCAAGGAAGCGCGCGAGTGCCTGGCACGCGAGCACTATGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAGCGGCTTGGATCTGGTGCAGTACATCCAGCAGCAGCATCCACAACTGCCGGTGGCG
ATGATCACCGCCTATGGCAGTCTCGACACCGCCATTGGCGCCCTGAAGGCCGGCGCTTTCGATTTTTTGACCAAGCCTGT
GGACCTCAACCGCCTTCGCGAACTCGTCAGCACCGCCTTGCGACTGCGCGCACCGGCGGCCGAATCGCCAGTGGACAATC
GCCTGCTCGGCAGTTCGCCGCCGATGAAGGTCCTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCGGTCTAT
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCCCGCCTGATTCACGAACAGGGCCCACGCAGCGACAAGCCCTT
CGTGCCGGTCAACTGCGGCGCGATCCCTTCGGAACTGATGGAAAGCGAATTTTTCGGCCACAAGAAGGGCAGCTTCAGTG
GCGCAATCGAGGACAAGCCCGGACTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAAGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCTATCCAGGAAAAGGCCGTACGCGCCGTCGGCGGTGCGCAGGAAGTGATGGT
CGACGTCCGAATCCTCTGTGCCACCCACAAGGATCTGGCCAGCGAAGTGGCCGCAGGCCGCTTTCGCCAGGACCTGTATT
ACCGTCTGAACGTCATCGAACTGCGTGTGCCGCCACTACGCGAGCGCCGTGAAGACATCGGCCTGCTCGCCGACGCCATG
CTGCGCCGGCTGGCACAGGAATGCGGCGACAGCAGTGCCCGGCTGCATCCTGATGCTCTGGCGAAGCTGGAAAACTATCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACGCTCTGCGAAGACGACGAGATCAAGGCCG
GCGACCTCCGTCTAGCCGACAGCCCGGGCCTGTCGGAGAGCGGCGAAGCCAGTCTGGCGCAGATCGATAACCTGGAAGAC
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCCCTTGAGGAAACCCGCTGGAACCGCACCGCGGCAGCCCAGCG
GCTTGGCCTGACCTTCCGCTCGATGCGCTACCGGCTGAAAAAGCTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	86.261	99.775	0.861
pilR	Acinetobacter baumannii strain A118	50.109	100	0.517