Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DM292_RS01040 Genome accession   NZ_CP029772
Coordinates   235863..237458 (-) Length   531 a.a.
NCBI ID   WP_063541895.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain R2A2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 230863..242458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM292_RS01025 (DM292_01025) - 231455..233050 (-) 1596 WP_110775884.1 PleD family two-component system response regulator -
  DM292_RS01030 (DM292_01030) - 233265..234320 (+) 1056 WP_110775885.1 DUF2333 family protein -
  DM292_RS01035 (DM292_01035) pilR 234399..235736 (-) 1338 WP_110775886.1 sigma-54 dependent transcriptional regulator Regulator
  DM292_RS01040 (DM292_01040) pilS 235863..237458 (-) 1596 WP_063541895.1 PAS domain-containing sensor histidine kinase Regulator
  DM292_RS01045 (DM292_01045) - 237448..237681 (-) 234 WP_110775887.1 PP0621 family protein -
  DM292_RS01050 (DM292_01050) - 237802..238791 (-) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  DM292_RS01055 (DM292_01055) rluD 238995..239969 (+) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DM292_RS01060 (DM292_01060) pgeF 239966..240703 (+) 738 WP_110775888.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58881.93 Da        Isoelectric Point: 8.1622

>NTDB_id=295971 DM292_RS01040 WP_063541895.1 235863..237458(-) (pilS) [Stutzerimonas frequens strain R2A2]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSISRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLGPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=295971 DM292_RS01040 WP_063541895.1 235863..237458(-) (pilS) [Stutzerimonas frequens strain R2A2]
GTGGGCACTGAGAACCTCGCTTTTCTCGGCGATCAGGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACCAT
CGGCCTGGCTCTGGTACTGCTGATAAGCAGTGACCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTGCTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAACCT
GCTGATCATTGCCGTCGCCATCGCCAACATCCTGCTACGCGGGCGCATCGGGTTCTTCGTTGCCGCCGTGGCAGCGATTG
GCCTGATCTACCTGACCTTCTATCTCAGCATCAGCCGGCCTGAAGCCAGCAGCCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAACCTCGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGGGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAGTCGCTCACCGGCGAGCGTCTT
GCCCCGCGCTGCCCGGAGTTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGGGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGACATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGACTCACCGCCAGCATCGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
CCGCCTGGCTCAGATCATTCAGGACCACTCTCGACGCATGAACCTGGTCATCGAGAACGTCCTGCAGCTTTCGCGGCGCC
GGCAGGCCGAGCCACAGTTGCTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTTGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGCCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTCACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAGAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657

Multiple sequence alignment