Detailed information NTG0295374

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DKY63_RS15610
• Genome accession: NZ_CP029693
• Coordinates: 3358445..3359317 (+)
• Length: 290 a.a.
• NCBI ID: WP_110964922.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain JBC17
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3353445..3364317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKY63_RS15585 (DKY63_15585)	-	3353672..3353968 (+)	297	WP_110964917.1	DUF2845 domain-containing protein	-
DKY63_RS15590 (DKY63_15590)	-	3354237..3354590 (-)	354	WP_110964918.1	BON domain-containing protein	-
DKY63_RS15595 (DKY63_15595)	-	3354900..3355301 (-)	402	WP_110964919.1	pilin	-
DKY63_RS15600 (DKY63_15600)	pilB	3355529..3357223 (+)	1695	WP_110964920.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DKY63_RS15605 (DKY63_15605)	pilC	3357226..3358443 (+)	1218	WP_110964921.1	type II secretion system F family protein	Machinery gene
DKY63_RS15610 (DKY63_15610)	pilD	3358445..3359317 (+)	873	WP_110964922.1	A24 family peptidase	Machinery gene
DKY63_RS15615 (DKY63_15615)	coaE	3359314..3359937 (+)	624	WP_110964923.1	dephospho-CoA kinase	-
DKY63_RS15620 (DKY63_15620)	yacG	3359934..3360137 (+)	204	WP_110964924.1	DNA gyrase inhibitor YacG	-
DKY63_RS15625 (DKY63_15625)	-	3360168..3360857 (-)	690	WP_110964925.1	energy-coupling factor ABC transporter permease	-
DKY63_RS15630 (DKY63_15630)	-	3361118..3361357 (+)	240	WP_110964926.1	DUF2790 domain-containing protein	-
DKY63_RS15635 (DKY63_15635)	-	3361366..3362634 (-)	1269	Protein_3007	OprD family porin	-
DKY63_RS15640 (DKY63_15640)	-	3362652..3363872 (-)	1221	WP_110964927.1	benzoate/H(+) symporter BenE family transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32548.89 Da
• Isoelectric Point: 8.0590

>NTDB_id=295374 DKY63_RS15610 WP_110964922.1 3358445..3359317(+) (pilD) [Pseudomonas putida strain JBC17]
MPLNEIMTLYPLAFVAIAGLVGLLVGSFLNVVIWRLPKMLEREWRVQAHEILGLPEETPLPTYNLLLPHSQCPRCEHRIR
AWENIPVISFLFLRGRCSACATPINKRYPLTELACGLLSAFVAWHFGFGWQAGMALLLTWGLLAMSQIDAEHQLLPDVLV
LPLLWLGLIVNSLELFVPLHDALWGAVAGYLLLWSVFWLFKLLTGKDGMGHGDFKLLAMFGAWGGWQILPLTILLSSFVG
AIIGVIYLRLRRAKTSTPIPFGPYLAIAGWIAMLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=295374 DKY63_RS15610 WP_110964922.1 3358445..3359317(+) (pilD) [Pseudomonas putida strain JBC17]
ATGCCCTTGAACGAAATCATGACGCTCTACCCCCTGGCATTCGTGGCAATCGCCGGTCTGGTGGGGCTGCTGGTCGGCAG
CTTTCTCAACGTGGTGATCTGGCGTCTGCCGAAGATGCTCGAACGCGAGTGGCGCGTGCAGGCCCATGAAATCCTCGGGT
TGCCCGAGGAAACGCCACTGCCCACCTACAATCTGCTGCTGCCCCATTCCCAGTGTCCGCGCTGCGAGCACCGGATTCGT
GCCTGGGAAAACATTCCCGTCATCAGCTTTCTCTTTCTGCGCGGACGCTGCTCGGCCTGCGCCACCCCCATCAACAAACG
CTACCCGTTGACCGAATTGGCCTGCGGCCTGTTGTCGGCGTTCGTGGCCTGGCACTTCGGTTTCGGCTGGCAAGCCGGCA
TGGCGTTGCTGCTGACCTGGGGCTTGTTGGCCATGAGCCAGATCGACGCCGAGCATCAACTGCTGCCGGATGTGCTGGTA
CTGCCGCTGTTGTGGCTGGGACTGATCGTCAATAGCCTCGAGCTGTTCGTGCCCCTGCATGACGCGCTGTGGGGCGCGGT
GGCCGGCTACCTGTTGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTTACCGGCAAGGACGGCATGGGTCACGGTGATT
TCAAGCTGCTGGCAATGTTCGGGGCCTGGGGCGGCTGGCAGATATTGCCGTTGACCATCCTGCTTTCGTCCTTTGTGGGG
GCGATCATCGGCGTGATTTACCTGCGTCTGCGCCGGGCAAAAACCTCGACGCCCATCCCCTTCGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCCATGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.817	97.931	0.517
pilD	Vibrio cholerae strain A1552	52.817	97.931	0.517
pilD	Acinetobacter baumannii D1279779	50.368	93.793	0.472
pilD	Acinetobacter nosocomialis M2	49.632	93.793	0.466
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459