Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DLJ48_RS03465 Genome accession   NZ_CP029684
Coordinates   692927..693496 (-) Length   189 a.a.
NCBI ID   WP_128685943.1    Uniprot ID   A0AAJ1VNP5
Organism   Oenococcus sicerae strain UCMA15228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 687927..698496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ48_RS03445 (DLJ48_03475) dnaB 688519..689976 (-) 1458 WP_128685935.1 replicative DNA helicase -
  DLJ48_RS03450 (DLJ48_03480) rplI 689978..690433 (-) 456 WP_128685937.1 50S ribosomal protein L9 -
  DLJ48_RS03455 (DLJ48_03485) - 690442..692493 (-) 2052 WP_128685939.1 DHH family phosphoesterase -
  DLJ48_RS03460 (DLJ48_03490) rpsR 692582..692902 (-) 321 WP_128685941.1 30S ribosomal protein S18 -
  DLJ48_RS03465 (DLJ48_03495) ssb 692927..693496 (-) 570 WP_128685943.1 single-stranded DNA-binding protein Machinery gene
  DLJ48_RS08665 rpsF 693670..693960 (-) 291 Protein_669 30S ribosomal protein S6 -
  DLJ48_RS03475 (DLJ48_03505) - 694088..694417 (-) 330 WP_128685947.1 ATP-binding cassette domain-containing protein -
  DLJ48_RS03480 (DLJ48_03510) - 694607..696085 (-) 1479 WP_128685949.1 multicopper oxidase family protein -
  DLJ48_RS03485 (DLJ48_03515) nadE 696257..697084 (+) 828 WP_128685951.1 ammonia-dependent NAD(+) synthetase -
  DLJ48_RS03490 (DLJ48_08620) - 697128..697286 (-) 159 WP_161566105.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20727.46 Da        Isoelectric Point: 4.7695

>NTDB_id=295231 DLJ48_RS03465 WP_128685943.1 692927..693496(-) (ssb) [Oenococcus sicerae strain UCMA15228]
MINRVVLVGRITRDVELRYTGNGDAVGSFTIAVERNFTNRAGDREADFISCVIWRKPAENFANFTGKGAMVAVEGRLQTR
TYDNNQGQKVYVTEIVVDNFQLLETRAQSEARRAQNGTPANGNASSAAPRSQSNFNIPTQQQPNPFDSQFSNNSQSASTN
HNQANNSSSPFNTDAGNDSLDISDDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=295231 DLJ48_RS03465 WP_128685943.1 692927..693496(-) (ssb) [Oenococcus sicerae strain UCMA15228]
ATGATCAATCGAGTTGTATTAGTTGGTAGAATCACCCGTGACGTTGAGTTGCGTTATACAGGAAATGGTGATGCGGTAGG
TTCCTTTACAATTGCAGTTGAGCGGAATTTTACGAATCGTGCTGGTGATCGTGAAGCTGATTTTATCAGTTGTGTGATTT
GGCGAAAACCTGCTGAAAATTTTGCCAATTTTACTGGTAAAGGTGCTATGGTTGCTGTCGAAGGTCGTTTACAAACGCGG
ACCTATGATAATAATCAAGGCCAAAAAGTTTATGTGACCGAAATCGTGGTTGATAATTTTCAGTTACTGGAAACGCGTGC
GCAGTCCGAAGCTCGGCGCGCTCAAAATGGTACGCCAGCCAATGGTAATGCTTCTTCTGCTGCACCGCGAAGTCAAAGTA
ATTTCAATATTCCAACGCAGCAGCAGCCGAATCCTTTTGATTCGCAATTTAGCAATAACTCGCAATCTGCTTCAACTAAT
CATAATCAAGCCAATAACTCTAGTAGTCCTTTTAATACGGACGCAGGAAATGATTCGCTTGATATCTCAGATGATGATCT
CCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.556

100

0.556
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.396

100

0.481

Multiple sequence alignment