Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EQH44_RS08650 Genome accession   NZ_CP035236
Coordinates   1728875..1730854 (-) Length   659 a.a.
NCBI ID   WP_000742234.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1902282     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723875..1735854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH44_RS08630 (EQH44_09145) - 1724373..1725299 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  EQH44_RS08635 (EQH44_09150) amiE 1725310..1726377 (-) 1068 WP_000159556.1 ABC transporter ATP-binding protein Regulator
  EQH44_RS08640 (EQH44_09155) amiD 1726386..1727312 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  EQH44_RS08645 (EQH44_09160) amiC 1727312..1728808 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  EQH44_RS08650 (EQH44_09165) amiA3 1728875..1730854 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator
  EQH44_RS08655 (EQH44_09170) - 1731649..1732905 (+) 1257 WP_000436244.1 ISL3-like element IS1167A family transposase -
  EQH44_RS08660 (EQH44_09175) - 1732961..1734154 (-) 1194 WP_000835622.1 O-antigen ligase -
  EQH44_RS08665 (EQH44_09185) gtfA 1734292..1735734 (-) 1443 WP_001122322.1 sucrose phosphorylase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72491.42 Da        Isoelectric Point: 4.6642

>NTDB_id=295075 EQH44_RS08650 WP_000742234.1 1728875..1730854(-) (amiA3) [Streptococcus pneumoniae strain TVO_1902282]
MKKNRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYVYTADPETLDYLISSKNSTTVVTSNGIDGLFTNDNYGNLAP
AVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAMYLAENSVKGLADYLSGTSTDFSTV
GVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYW
DKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKVAEEYKDNIYYTQSGSGIAGLGVNIDRQSYNYTS
KTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVRNLFVKPDFVSAGEKTFGDLVAAQLPAYGDEWKG
VNLADGQDGLFNADKAKAEFAKAKKALEADGVQFPIHLDVPVDQASKNYISRIQSFKQSVETVLGVENVVVDIQQMTSDE
FLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTKTYLGFDNPNSPSVVQVGLKEYDKLVDEAARETS
DLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQTGSKGSDVYFKYLKLQDKVVTKEEYEKAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=295075 EQH44_RS08650 WP_000742234.1 1728875..1730854(-) (amiA3) [Streptococcus pneumoniae strain TVO_1902282]
ATGAAAAAAAATCGTGTATTTGCTACAGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGCAGCATGCAGTTCTTCAAA
ATCATCTGATTCATCAGCCCCTAAAGCTTATGGCTATGTTTATACAGCAGACCCAGAAACCTTGGACTACCTGATTTCAA
GTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAATTACGGTAATCTTGCTCCT
GCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTAAAGGGGTTAAATGGTTTAC
CTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACACGCAGCAGATAAAAAATCAG
AAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTCAACAGATTTTTCAACAGTT
GGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCTGGAACTCTAAGTTGACCTA
TTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAACCAACAGATCCGACATCCT
TGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGTAAAAAATGAGCAATATTGG
GATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGGAGTCGCTAGAGCGTAACTT
CACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTTGCAGAAGAATACAAGGACA
ATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCAAAGTTACAACTATACTTCT
AAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTCAAGCCTTGAATTTTGCTCT
TGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGTAATTTATTTGTAAAACCAG
ACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTATGGTGATGAGTGGAAAGGT
GTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAGTTTGCGAAAGCTAAGAAAGCTTT
AGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGACGTTCCAGTAGACCAAGCATCAAAAAACTACATATCTCGTATTC
AGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCAACAAATGACAAGTGATGAA
TTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCAGGAGGAGTTTCATGGGGGCCAGA
CTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAAACATATTTAGGATTTGATA
ATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGAAGCTGCCAGAGAGACAAGC
GACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCACTCTTTATTCCTGCTATGGC
TTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAAACAGGCTCTAAGGGGTCAG
ATGTTTACTTCAAATATTTGAAATTACAAGATAAAGTGGTGACTAAGGAAGAGTATGAAAAAGCTCGTGAAAAATGGTTG
AAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.97

100

0.671
  amiA Streptococcus salivarius strain HSISS4

66.92

100

0.669
  amiA3 Streptococcus thermophilus LMG 18311

66.818

100

0.669

Multiple sequence alignment