Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CNQ40_RS04635 | Genome accession | NZ_CP029612 |
| Coordinates | 869636..870163 (+) | Length | 175 a.a. |
| NCBI ID | WP_057086515.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain H25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 857848..897842 | 869636..870163 | within | 0 |
Gene organization within MGE regions
Location: 857848..897842
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ40_RS04535 (CNQ40_04535) | - | 857848..859041 (+) | 1194 | WP_095714961.1 | GNAT family N-acetyltransferase | - |
| CNQ40_RS04550 (CNQ40_04550) | - | 859506..860642 (-) | 1137 | WP_010712197.1 | site-specific integrase | - |
| CNQ40_RS04555 (CNQ40_04555) | - | 860718..861047 (-) | 330 | WP_010712198.1 | hypothetical protein | - |
| CNQ40_RS04560 (CNQ40_04560) | - | 861061..861795 (-) | 735 | WP_095714960.1 | DUF4950 domain-containing protein | - |
| CNQ40_RS04565 (CNQ40_04565) | - | 861817..862455 (-) | 639 | WP_064687096.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CNQ40_RS04570 (CNQ40_04570) | - | 862470..862811 (-) | 342 | WP_010716881.1 | helix-turn-helix transcriptional regulator | - |
| CNQ40_RS04575 (CNQ40_04575) | - | 863132..863308 (+) | 177 | WP_002364354.1 | helix-turn-helix transcriptional regulator | - |
| CNQ40_RS04580 (CNQ40_04580) | - | 863322..863660 (+) | 339 | WP_095714959.1 | DUF771 domain-containing protein | - |
| CNQ40_RS04585 (CNQ40_04585) | - | 863718..863999 (+) | 282 | WP_095714958.1 | hypothetical protein | - |
| CNQ40_RS04590 (CNQ40_04590) | - | 864399..865109 (+) | 711 | WP_095714957.1 | Rha family transcriptional regulator | - |
| CNQ40_RS04595 (CNQ40_04595) | - | 865120..865305 (+) | 186 | WP_033598023.1 | hypothetical protein | - |
| CNQ40_RS04600 (CNQ40_04600) | - | 865316..865516 (+) | 201 | WP_239407776.1 | hypothetical protein | - |
| CNQ40_RS16495 | - | 865528..865668 (+) | 141 | WP_162565037.1 | hypothetical protein | - |
| CNQ40_RS04605 (CNQ40_04605) | - | 865833..866018 (-) | 186 | WP_025188165.1 | DUF1508 domain-containing protein | - |
| CNQ40_RS04610 (CNQ40_04610) | - | 866184..866486 (+) | 303 | WP_002404544.1 | hypothetical protein | - |
| CNQ40_RS16825 | - | 866571..866693 (+) | 123 | WP_002364322.1 | hypothetical protein | - |
| CNQ40_RS04615 (CNQ40_04615) | - | 866677..867156 (+) | 480 | WP_002381628.1 | siphovirus Gp157 family protein | - |
| CNQ40_RS04620 (CNQ40_04620) | - | 867168..868184 (+) | 1017 | WP_095714955.1 | AAA family ATPase | - |
| CNQ40_RS04625 (CNQ40_04625) | - | 868189..868830 (+) | 642 | WP_095714954.1 | putative HNHc nuclease | - |
| CNQ40_RS04630 (CNQ40_04630) | - | 868834..869631 (+) | 798 | WP_095714953.1 | helix-turn-helix domain-containing protein | - |
| CNQ40_RS04635 (CNQ40_04635) | ssb | 869636..870163 (+) | 528 | WP_057086515.1 | single-stranded DNA-binding protein | Machinery gene |
| CNQ40_RS04640 (CNQ40_04640) | - | 870176..870505 (+) | 330 | WP_033600926.1 | hypothetical protein | - |
| CNQ40_RS04645 (CNQ40_04645) | - | 870525..870731 (+) | 207 | WP_095714952.1 | hypothetical protein | - |
| CNQ40_RS04650 (CNQ40_04650) | - | 870745..871437 (+) | 693 | WP_010818750.1 | N-6 DNA methylase | - |
| CNQ40_RS04655 (CNQ40_04655) | - | 871434..872378 (+) | 945 | WP_002406057.1 | site-specific integrase | - |
| CNQ40_RS04660 (CNQ40_04660) | - | 872391..872963 (+) | 573 | WP_095715049.1 | hypothetical protein | - |
| CNQ40_RS04665 (CNQ40_04665) | - | 872947..873333 (+) | 387 | WP_095715052.1 | YopX family protein | - |
| CNQ40_RS04670 (CNQ40_04670) | - | 873330..873668 (+) | 339 | WP_063855928.1 | hypothetical protein | - |
| CNQ40_RS04675 (CNQ40_04675) | - | 873668..873907 (+) | 240 | WP_002373022.1 | hypothetical protein | - |
| CNQ40_RS04680 (CNQ40_04680) | - | 873907..874155 (+) | 249 | WP_010825832.1 | hypothetical protein | - |
| CNQ40_RS04685 (CNQ40_04685) | - | 874167..874700 (+) | 534 | WP_095715050.1 | DUF1642 domain-containing protein | - |
| CNQ40_RS16545 | - | 874701..874862 (+) | 162 | WP_202255443.1 | hypothetical protein | - |
| CNQ40_RS04690 (CNQ40_04690) | - | 874862..875074 (+) | 213 | WP_105577456.1 | hypothetical protein | - |
| CNQ40_RS04695 (CNQ40_04695) | - | 875075..875494 (+) | 420 | WP_002395898.1 | transcriptional regulator | - |
| CNQ40_RS04700 (CNQ40_04700) | - | 875742..876386 (+) | 645 | WP_095715045.1 | hypothetical protein | - |
| CNQ40_RS04705 (CNQ40_04705) | - | 876453..876914 (+) | 462 | WP_095715044.1 | helix-turn-helix domain-containing protein | - |
| CNQ40_RS04710 (CNQ40_04710) | terL | 876907..878295 (+) | 1389 | WP_095715043.1 | phage terminase large subunit | - |
| CNQ40_RS04715 (CNQ40_04715) | - | 878308..879783 (+) | 1476 | WP_095715042.1 | phage portal protein | - |
| CNQ40_RS04720 (CNQ40_04720) | - | 879758..880798 (+) | 1041 | WP_095715041.1 | phage head morphogenesis protein | - |
| CNQ40_RS04725 (CNQ40_04725) | - | 880807..881127 (+) | 321 | WP_095715040.1 | hypothetical protein | - |
| CNQ40_RS04730 (CNQ40_04730) | - | 881195..881458 (+) | 264 | WP_025189865.1 | DUF6275 family protein | - |
| CNQ40_RS04735 (CNQ40_04735) | - | 881599..882225 (+) | 627 | WP_095715039.1 | DUF4355 domain-containing protein | - |
| CNQ40_RS04740 (CNQ40_04740) | - | 882239..883141 (+) | 903 | WP_095715038.1 | DUF5309 family protein | - |
| CNQ40_RS04745 (CNQ40_04745) | - | 883164..883400 (+) | 237 | WP_002372022.1 | hypothetical protein | - |
| CNQ40_RS04750 (CNQ40_04750) | - | 883409..883753 (+) | 345 | WP_010784639.1 | hypothetical protein | - |
| CNQ40_RS04755 (CNQ40_04755) | - | 883750..884127 (+) | 378 | WP_095715037.1 | hypothetical protein | - |
| CNQ40_RS04760 (CNQ40_04760) | - | 884120..884518 (+) | 399 | WP_002402415.1 | HK97 gp10 family phage protein | - |
| CNQ40_RS04765 (CNQ40_04765) | - | 884522..884896 (+) | 375 | WP_095715036.1 | DUF6838 family protein | - |
| CNQ40_RS04770 (CNQ40_04770) | - | 884897..885739 (+) | 843 | WP_095715035.1 | major tail protein | - |
| CNQ40_RS04775 (CNQ40_04775) | - | 885793..886143 (+) | 351 | WP_095715034.1 | hypothetical protein | - |
| CNQ40_RS04780 (CNQ40_04780) | - | 886392..889310 (+) | 2919 | WP_162565058.1 | tape measure protein | - |
| CNQ40_RS04785 (CNQ40_04785) | - | 889300..890034 (+) | 735 | WP_095715032.1 | phage tail protein | - |
| CNQ40_RS04790 (CNQ40_04790) | - | 890016..892730 (+) | 2715 | WP_162565046.1 | phage tail spike protein | - |
| CNQ40_RS04795 (CNQ40_04795) | - | 892745..893653 (+) | 909 | WP_095715030.1 | phage baseplate upper protein | - |
| CNQ40_RS04800 (CNQ40_04800) | - | 893646..893963 (+) | 318 | WP_002383821.1 | hypothetical protein | - |
| CNQ40_RS04805 (CNQ40_04805) | - | 893956..894273 (+) | 318 | WP_002383822.1 | hypothetical protein | - |
| CNQ40_RS04810 (CNQ40_04810) | - | 894273..894824 (+) | 552 | WP_010821095.1 | hypothetical protein | - |
| CNQ40_RS04815 (CNQ40_04815) | - | 894839..895213 (+) | 375 | WP_095715055.1 | hypothetical protein | - |
| CNQ40_RS04820 (CNQ40_04820) | - | 895213..895350 (+) | 138 | WP_002380794.1 | XkdX family protein | - |
| CNQ40_RS04825 (CNQ40_04825) | - | 895385..895618 (+) | 234 | WP_002367247.1 | hemolysin XhlA family protein | - |
| CNQ40_RS04830 (CNQ40_04830) | - | 895621..895824 (+) | 204 | WP_010711247.1 | phage holin | - |
| CNQ40_RS04835 (CNQ40_04835) | - | 895829..896914 (+) | 1086 | WP_095715054.1 | SH3 domain-containing protein | - |
| CNQ40_RS04840 (CNQ40_04840) | - | 897309..897842 (+) | 534 | WP_002402066.1 | PBECR4 domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19361.20 Da Isoelectric Point: 4.7078
>NTDB_id=294228 CNQ40_RS04635 WP_057086515.1 869636..870163(+) (ssb) [Enterococcus faecalis strain H25]
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSIQTSQNSGTSVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSIQTSQNSGTSVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=294228 CNQ40_RS04635 WP_057086515.1 869636..870163(+) (ssb) [Enterococcus faecalis strain H25]
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAAAGTTTCCAATTATTAGAGTCAAAAAG
CACCAACGAGAATAGAAATAGCATTCAGACTTCACAGAATAGCGGTACAAGCGTTCAAAACAATTTCGAGAGTAATTATG
CCACAAATCAAAATAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAAAGTTTCCAATTATTAGAGTCAAAAAG
CACCAACGAGAATAGAAATAGCATTCAGACTTCACAGAATAGCGGTACAAGCGTTCAAAACAATTTCGAGAGTAATTATG
CCACAAATCAAAATAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.227 |
100 |
0.606 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.571 |
100 |
0.566 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |