Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EQW70_RS05135 Genome accession   NZ_CP035226
Coordinates   985411..986058 (+) Length   215 a.a.
NCBI ID   WP_024573282.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 980411..991058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS05120 (EQW70_05120) glpD 980583..982250 (+) 1668 WP_128740148.1 glycerol-3-phosphate dehydrogenase -
  EQW70_RS05125 (EQW70_05125) pgcA 982382..984127 (+) 1746 WP_128740149.1 phosphoglucomutase -
  EQW70_RS05130 (EQW70_05130) yhcY 984275..985414 (+) 1140 WP_029726343.1 two-component system sensor histidine kinase YhcY -
  EQW70_RS05135 (EQW70_05135) vraR 985411..986058 (+) 648 WP_024573282.1 two-component system response regulator YhcZ Regulator
  EQW70_RS05140 (EQW70_05140) yhdA 986055..986579 (+) 525 WP_128740150.1 FMN-dependent NADPH-azoreductase -
  EQW70_RS05145 (EQW70_05145) yhdB 986594..986836 (-) 243 WP_003233373.1 YhdB family protein -
  EQW70_RS05150 (EQW70_05150) yhdC 987037..987360 (+) 324 WP_024573280.1 YqzG/YhdC family protein -
  EQW70_RS05155 (EQW70_05155) lytF 987402..988868 (-) 1467 WP_128740151.1 peptidoglycan endopeptidase LytF -
  EQW70_RS05160 (EQW70_05160) nsrR 989021..989461 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24150.76 Da        Isoelectric Point: 6.0922

>NTDB_id=294190 EQW70_RS05135 WP_024573282.1 985411..986058(+) (vraR) [Bacillus subtilis strain SRCM103517]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETDIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=294190 EQW70_RS05135 WP_024573282.1 985411..986058(+) (vraR) [Bacillus subtilis strain SRCM103517]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGGATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.865

100

0.414

Multiple sequence alignment