Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   EQJ84_RS14895 Genome accession   NZ_CP035191
Coordinates   2872910..2873914 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SRCM104011     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2867910..2878914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ84_RS14870 (EQJ84_14870) acuA 2868837..2869469 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  EQJ84_RS14875 (EQJ84_14875) acuB 2869496..2870140 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  EQJ84_RS14880 (EQJ84_14880) acuC 2870137..2871300 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  EQJ84_RS14885 (EQJ84_14885) motS 2871311..2872039 (-) 729 WP_015714527.1 flagellar motor protein MotS -
  EQJ84_RS14890 (EQJ84_14890) motP 2872029..2872847 (-) 819 WP_015714528.1 flagellar motor protein MotP -
  EQJ84_RS14895 (EQJ84_14895) ccpA 2872910..2873914 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  EQJ84_RS14900 (EQJ84_14900) aroX 2874190..2875266 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  EQJ84_RS14905 (EQJ84_14905) ytxJ 2875502..2875828 (-) 327 WP_015714529.1 bacillithiol system redox-active protein YtxJ -
  EQJ84_RS14910 (EQJ84_14910) ytxH 2875852..2876307 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  EQJ84_RS14915 (EQJ84_14915) ytxG 2876338..2876760 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  EQJ84_RS14920 (EQJ84_14920) murC 2876922..2878220 (-) 1299 WP_015714530.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=294124 EQJ84_RS14895 WP_003229285.1 2872910..2873914(-) (ccpA) [Bacillus subtilis strain SRCM104011]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=294124 EQJ84_RS14895 WP_003229285.1 2872910..2873914(-) (ccpA) [Bacillus subtilis strain SRCM104011]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCTGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCATTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCAAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment