Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DL538_RS02410 Genome accession   NZ_CP029609
Coordinates   426302..426751 (-) Length   149 a.a.
NCBI ID   WP_131227100.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 421302..431751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS02370 - 421756..421944 (+) 189 Protein_421 hypothetical protein -
  DL538_RS02375 (DL538_02365) - 421980..422295 (+) 316 Protein_422 RDD family protein -
  DL538_RS02380 (DL538_02370) yckD 422377..422709 (+) 333 WP_015252849.1 YckD family protein -
  DL538_RS02385 (DL538_02375) - 422837..423259 (+) 423 WP_174616579.1 MarR family transcriptional regulator -
  DL538_RS02390 (DL538_02380) - 423247..423588 (+) 342 WP_032724911.1 DUF3147 family protein -
  DL538_RS02395 (DL538_02385) - 423607..424334 (+) 728 Protein_426 AAA family ATPase -
  DL538_RS02400 (DL538_02390) bglC 424407..425840 (+) 1434 WP_131227099.1 6-phospho-beta-glucosidase -
  DL538_RS02405 (DL538_02395) nin/comJ 425877..426275 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  DL538_RS02410 (DL538_02400) nucA/comI 426302..426751 (-) 450 WP_131227100.1 DNA-entry nuclease Machinery gene
  DL538_RS02415 (DL538_02405) tlpC 426919..428640 (-) 1722 WP_131227101.1 methyl-accepting chemotaxis protein TlpC -
  DL538_RS02420 (DL538_02410) hxlB 428751..429308 (-) 558 WP_131227102.1 6-phospho-3-hexuloisomerase -
  DL538_RS02425 (DL538_02415) hxlA 429314..429946 (-) 633 WP_131227103.1 3-hexulose-6-phosphate synthase -
  DL538_RS02430 (DL538_02420) hxlR 430179..430541 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16500.45 Da        Isoelectric Point: 4.5282

>NTDB_id=294095 DL538_RS02410 WP_131227100.1 426302..426751(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain G7]
MNITTDIIKTILLVIVIIAAATVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=294095 DL538_RS02410 WP_131227100.1 426302..426751(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain G7]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAACTGTCGGTCTGATAAA
AGGAGACTTTTTCTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment