Detailed information NTG0294070

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: DLD99_RS20920
• Genome accession: NZ_CP029608
• Coordinates: 4594457..4596700 (-)
• Length: 747 a.a.
• NCBI ID: WP_114884764.1
• Uniprot ID: A0A345RU74
• Organism: Pseudomonas kribbensis strain 46-2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4589457..4601700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLD99_RS20885 (DLD99_20880)	murB	4589857..4590876 (-)	1020	WP_114884758.1	UDP-N-acetylmuramate dehydrogenase	-
DLD99_RS20890 (DLD99_20885)	-	4590873..4591337 (-)	465	WP_114884760.1	low molecular weight protein-tyrosine-phosphatase	-
DLD99_RS20895 (DLD99_20890)	kdsB	4591337..4592101 (-)	765	WP_074688122.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DLD99_RS20900 (DLD99_20895)	-	4592098..4592283 (-)	186	WP_003179363.1	Trm112 family protein	-
DLD99_RS20905 (DLD99_20900)	lpxK	4592308..4593318 (-)	1011	WP_114884762.1	tetraacyldisaccharide 4'-kinase	-
DLD99_RS20910 (DLD99_20905)	-	4593318..4593746 (-)	429	WP_007950767.1	biopolymer transporter ExbD	-
DLD99_RS20915 (DLD99_20910)	exbB	4593743..4594378 (-)	636	WP_162803506.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
DLD99_RS20920 (DLD99_20915)	comA	4594457..4596700 (-)	2244	WP_114884764.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
DLD99_RS20925 (DLD99_20920)	-	4596837..4597355 (+)	519	WP_114884766.1	DUF2062 domain-containing protein	-
DLD99_RS20930 (DLD99_20925)	-	4597410..4598189 (-)	780	WP_085710947.1	ABC transporter permease	-
DLD99_RS20935 (DLD99_20930)	-	4598186..4599118 (-)	933	WP_114884768.1	ABC transporter ATP-binding protein	-
DLD99_RS20940 (DLD99_20935)	-	4599250..4599873 (-)	624	WP_114884770.1	glutathione S-transferase	-
DLD99_RS20945 (DLD99_20940)	-	4599917..4600576 (-)	660	WP_114884772.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82034.15 Da
• Isoelectric Point: 9.6222

>NTDB_id=294070 DLD99_RS20920 WP_114884764.1 4594457..4596700(-) (comA) [Pseudomonas kribbensis strain 46-2]
MRTGMMALAVGLLAPVFLPALPPVGWMLWLPVVALMLLPFRSYPLAFLLFGFAWSCIGAQWALDERLPVELDGETRWVEG
RVVGLPQSGDGVVRFELADARSRHGKLPSLIRLAWYDGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGRRLAEAQWAWRDGIRQRLLEVDTQGRGAALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYGL
VAGLVRFGVWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
AALRPGLWLSFTAVAVLIFTFGGRLGPWRWWQIWTRAQWLIAIGLCPVLLILGLPISLSGPLANLLAVPWISFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLVDGLFRALALIAGRWPAWVAPSMPGWILALGCIGAVLLLLPRGIPLRPLGWPLLLVLA
FPPREQLAEGMADVWQLDVGQGLAILIRTRHHTLLYDTGPRFGDFDVGERVVLPALHKLGVERLDLMLLSHADADHAGGA
LAVASGLPVSRVISGDPSGLPEVLNAETCESGRQWQWDGVAFHLWQWGDAQDSNQRSCVLQIEANGERLLLTGDIDTAAE
RDLLNSVLAVPTQWLQAPHHGSRSSSSMALLKVLQPRDVLISRGQGNSFGHPHPTVIARYRKQGLRIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWREPPQPGATHR

Nucleotide

• Length: 2244 bp

>NTDB_id=294070 DLD99_RS20920 WP_114884764.1 4594457..4596700(-) (comA) [Pseudomonas kribbensis strain 46-2]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGGTGGAT
GCTGTGGCTGCCGGTGGTGGCACTGATGCTGTTGCCGTTTCGCAGTTATCCGCTGGCATTTTTGCTGTTCGGCTTCGCCT
GGTCTTGTATCGGCGCGCAATGGGCGCTGGATGAGCGACTGCCGGTGGAGCTGGACGGCGAGACGCGCTGGGTCGAAGGG
CGGGTCGTTGGTCTGCCGCAGAGCGGCGACGGGGTCGTGCGCTTCGAGTTGGCCGATGCCCGTTCGCGTCACGGGAAACT
GCCTTCGCTGATACGCCTGGCCTGGTACGACGGGCCACCGGTCAACAGCGGTGAGCGCTGGCGGTTGGCGGTCAAACTCA
AACGTCCCGGCGGGTTGCTCAATCCCGATGCCTTCGATTACGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCTACCGGC
ACAGTTAAGGACGGCCGTCGGCTGGCGGAGGCGCAGTGGGCCTGGCGGGACGGCATCCGACAGCGTCTGCTGGAGGTGGA
TACACAGGGCCGGGGCGCGGCGCTGGCGGCGTTAGTCCTGGGCGATGGCTCGGGGCTCAGTCGCGAGGACTGGCAGATCC
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGACAGCACATCGGTCTGCTGGCGGCGGTGATGTATGGGCTG
GTCGCCGGACTGGTGCGATTCGGTGTGTGGCCGTTGCGTTGGCCATGGCTGCCGTGGGCCTGTGGTCTGGCGTTCGCGGC
AGCGTTGGGGTACGGGCTGCTGGCCGGGTTCGATGTGCCGGTGCGACGAGCCTGCGTGATGGTTGCGCTGGTGTTGCTTT
GGAGATTGCGCTTTCGCCATCTCGGTGCCTGGTGGCCGTTGTTGCTGGCCTTCAATGGTGTGCTGCTGATGGATCCGCTG
GCGGCTCTGCGTCCAGGGCTGTGGTTGTCTTTCACGGCGGTGGCAGTACTGATTTTTACCTTCGGCGGTCGTCTGGGGCC
GTGGCGCTGGTGGCAGATCTGGACGCGTGCGCAATGGCTGATCGCAATCGGCTTGTGCCCGGTGTTGCTGATCCTGGGCC
TGCCGATCAGTCTCAGCGGGCCATTGGCCAATCTGCTGGCGGTGCCGTGGATCAGTTTTGCGGTGCTCCCGCCGGCATTG
CTCGGCACTTTGTTGTTGCCGATTCCCTATGTCGGCGAAGGTCTGTTGTGGCTGGCCGGCGGGCTGGTCGATGGATTGTT
CCGGGCTCTGGCCCTGATCGCCGGGCGCTGGCCGGCGTGGGTGGCGCCATCGATGCCGGGATGGATCCTGGCGCTGGGCT
GCATCGGTGCCGTGTTGTTATTACTGCCCCGAGGCATTCCATTGCGTCCCTTGGGCTGGCCGCTGCTGCTGGTGCTGGCA
TTTCCGCCCCGGGAGCAGTTGGCCGAAGGTATGGCGGATGTCTGGCAACTCGATGTCGGCCAAGGGCTGGCGATTTTGAT
CCGCACACGCCATCACACATTGCTGTACGACACCGGGCCGCGCTTCGGGGATTTCGATGTCGGCGAGCGAGTGGTGCTGC
CAGCCTTGCACAAACTGGGTGTGGAGCGACTCGATCTGATGTTGCTCAGCCATGCCGACGCCGACCATGCCGGAGGGGCG
CTGGCCGTGGCAAGCGGCTTGCCGGTCAGTCGGGTGATCAGCGGCGATCCGTCGGGGCTGCCCGAAGTGCTGAACGCTGA
AACCTGTGAAAGTGGTCGGCAGTGGCAGTGGGACGGCGTTGCCTTTCATCTATGGCAGTGGGGGGACGCTCAGGACAGTA
ACCAGCGTTCCTGTGTCCTGCAGATCGAAGCCAACGGCGAGCGATTGCTGTTGACCGGCGATATCGACACTGCTGCCGAA
CGGGATTTGCTTAACAGCGTGTTGGCGGTCCCTACTCAGTGGCTGCAAGCACCGCACCATGGCAGCCGCAGTTCTTCCTC
GATGGCATTGCTCAAGGTTTTGCAGCCCCGGGACGTGCTGATCTCCCGGGGGCAGGGCAATTCGTTCGGGCATCCGCATC
CGACCGTCATCGCCCGTTACCGCAAGCAAGGTTTGCGCATCCATGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCCGATTTCAGCCGGCCCGGTCGATGCGTCAGCAACGCCGGTTCTGGCGCGAGCCGCCCCAGCCGGGGGCGACGCACCG
TTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-680)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

3D structure

• AlphaFold DB: A0A345RU74

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.448	96.252	0.601