Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DLD99_RS20915 Genome accession   NZ_CP029608
Coordinates   4593743..4594378 (-) Length   211 a.a.
NCBI ID   WP_162803506.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain 46-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4588743..4599378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD99_RS20880 (DLD99_20875) - 4589141..4589611 (-) 471 WP_085710940.1 (2Fe-2S)-binding protein -
  DLD99_RS20885 (DLD99_20880) murB 4589857..4590876 (-) 1020 WP_114884758.1 UDP-N-acetylmuramate dehydrogenase -
  DLD99_RS20890 (DLD99_20885) - 4590873..4591337 (-) 465 WP_114884760.1 low molecular weight protein-tyrosine-phosphatase -
  DLD99_RS20895 (DLD99_20890) kdsB 4591337..4592101 (-) 765 WP_074688122.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DLD99_RS20900 (DLD99_20895) - 4592098..4592283 (-) 186 WP_003179363.1 Trm112 family protein -
  DLD99_RS20905 (DLD99_20900) lpxK 4592308..4593318 (-) 1011 WP_114884762.1 tetraacyldisaccharide 4'-kinase -
  DLD99_RS20910 (DLD99_20905) - 4593318..4593746 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  DLD99_RS20915 (DLD99_20910) exbB 4593743..4594378 (-) 636 WP_162803506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DLD99_RS20920 (DLD99_20915) comA 4594457..4596700 (-) 2244 WP_114884764.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DLD99_RS20925 (DLD99_20920) - 4596837..4597355 (+) 519 WP_114884766.1 DUF2062 domain-containing protein -
  DLD99_RS20930 (DLD99_20925) - 4597410..4598189 (-) 780 WP_085710947.1 ABC transporter permease -
  DLD99_RS20935 (DLD99_20930) - 4598186..4599118 (-) 933 WP_114884768.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22858.96 Da        Isoelectric Point: 7.3615

>NTDB_id=294069 DLD99_RS20915 WP_162803506.1 4593743..4594378(-) (exbB) [Pseudomonas kribbensis strain 46-2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=294069 DLD99_RS20915 WP_162803506.1 4593743..4594378(-) (exbB) [Pseudomonas kribbensis strain 46-2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAACGCCTGTGGACGCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAATGCGCTGGGCACCATCGCCGCCATGTCGCCGCTGCTGGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCTTCGGTATTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACGGCG
GCGGGCCTGATGGTCGGTATCCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTACAGGGCGACCGTGATGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment