Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EQ842_RS11730 Genome accession   NZ_CP035185
Coordinates   2443602..2444267 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 11A1213CRGN055     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2438602..2449267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQ842_RS11700 (EQ842_11700) - 2439342..2440295 (-) 954 WP_000972583.1 M15 family metallopeptidase -
  EQ842_RS11705 (EQ842_11705) - 2440303..2440905 (-) 603 WP_000046451.1 hypothetical protein -
  EQ842_RS11710 (EQ842_11710) icmH 2440918..2441724 (-) 807 WP_000083625.1 type IVB secretion system protein IcmH/DotU -
  EQ842_RS11715 (EQ842_11715) tssK 2441742..2442437 (-) 696 Protein_2273 type VI secretion system baseplate subunit TssK -
  EQ842_RS11730 (EQ842_11730) crp 2443602..2444267 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  EQ842_RS19130 - 2444508..2444627 (+) 120 Protein_2276 hypothetical protein -
  EQ842_RS11735 (EQ842_11735) - 2444706..2445128 (+) 423 WP_001195082.1 OsmC family protein -
  EQ842_RS11740 (EQ842_11740) - 2445268..2446358 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  EQ842_RS11745 (EQ842_11745) tssK 2446378..2447055 (-) 678 Protein_2279 type VI secretion system baseplate subunit TssK -
  EQ842_RS11750 (EQ842_11750) tssA 2447072..2448166 (-) 1095 WP_000020713.1 type VI secretion system protein TssA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=293758 EQ842_RS11730 WP_000203219.1 2443602..2444267(-) (crp) [Acinetobacter baumannii strain 11A1213CRGN055]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=293758 EQ842_RS11730 WP_000203219.1 2443602..2444267(-) (crp) [Acinetobacter baumannii strain 11A1213CRGN055]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425

Multiple sequence alignment