Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   DLD53_RS14550 Genome accession   NZ_CP029569
Coordinates   2987150..2987890 (+) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii strain DA33098     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2982150..2992890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD53_RS14535 (DLD53_14530) ponA 2982737..2985292 (-) 2556 WP_000736667.1 penicillin-binding protein PBP1a -
  DLD53_RS14540 (DLD53_14535) pilM 2985454..2986512 (+) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  DLD53_RS14545 (DLD53_14540) pilN 2986512..2987153 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  DLD53_RS14550 (DLD53_14545) pilO 2987150..2987890 (+) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  DLD53_RS14555 (DLD53_14550) pilP 2987901..2988428 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  DLD53_RS14560 (DLD53_14555) pilQ 2988491..2990656 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  DLD53_RS14565 (DLD53_14560) aroK 2990668..2991237 (+) 570 WP_000643712.1 shikimate kinase AroK -
  DLD53_RS14570 (DLD53_14565) aroB 2991266..2992348 (+) 1083 WP_001193991.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=293756 DLD53_RS14550 WP_000076099.1 2987150..2987890(+) (pilO) [Acinetobacter baumannii strain DA33098]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=293756 DLD53_RS14550 WP_000076099.1 2987150..2987890(+) (pilO) [Acinetobacter baumannii strain DA33098]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment