Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EQ844_RS11790 Genome accession   NZ_CP035183
Coordinates   2447358..2448023 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 11A14CRGN003     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2442358..2453023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQ844_RS11760 (EQ844_11760) - 2443098..2444051 (-) 954 WP_000972583.1 M15 family metallopeptidase -
  EQ844_RS11765 (EQ844_11765) - 2444059..2444661 (-) 603 WP_000046451.1 hypothetical protein -
  EQ844_RS11770 (EQ844_11770) icmH 2444674..2445480 (-) 807 WP_000083625.1 type IVB secretion system protein IcmH/DotU -
  EQ844_RS11775 (EQ844_11775) tssK 2445498..2446193 (-) 696 Protein_2280 type VI secretion system baseplate subunit TssK -
  EQ844_RS11790 (EQ844_11790) crp 2447358..2448023 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  EQ844_RS19240 - 2448264..2448383 (+) 120 Protein_2283 hypothetical protein -
  EQ844_RS11795 (EQ844_11795) - 2448462..2448884 (+) 423 WP_001195082.1 OsmC family protein -
  EQ844_RS11800 (EQ844_11800) - 2449024..2450114 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  EQ844_RS11805 (EQ844_11805) tssK 2450134..2450811 (-) 678 Protein_2286 type VI secretion system baseplate subunit TssK -
  EQ844_RS11810 (EQ844_11810) tssA 2450828..2451922 (-) 1095 WP_000020713.1 type VI secretion system protein TssA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=293598 EQ844_RS11790 WP_000203219.1 2447358..2448023(-) (crp) [Acinetobacter baumannii strain 11A14CRGN003]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=293598 EQ844_RS11790 WP_000203219.1 2447358..2448023(-) (crp) [Acinetobacter baumannii strain 11A14CRGN003]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425

Multiple sequence alignment