Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EQ844_RS05465 Genome accession   NZ_CP035183
Coordinates   1161144..1161809 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 11A14CRGN003     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156144..1166809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQ844_RS05445 (EQ844_05445) - 1156712..1157959 (-) 1248 WP_000498089.1 L,D-transpeptidase -
  EQ844_RS05450 (EQ844_05450) hemE 1158259..1159332 (+) 1074 WP_000209403.1 uroporphyrinogen decarboxylase -
  EQ844_RS05455 (EQ844_05455) - 1159339..1159977 (+) 639 Protein_1035 DUF817 family protein -
  EQ844_RS05465 (EQ844_05465) crp 1161144..1161809 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  EQ844_RS19220 - 1162050..1162169 (+) 120 Protein_1038 hypothetical protein -
  EQ844_RS05470 (EQ844_05470) - 1162248..1162670 (+) 423 WP_001195082.1 OsmC family protein -
  EQ844_RS05475 (EQ844_05475) - 1162810..1163900 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  EQ844_RS05485 (EQ844_05485) - 1163921..1164082 (+) 162 Protein_1041 DUF817 family protein -
  EQ844_RS05490 (EQ844_05490) - 1164228..1164698 (+) 471 WP_000914200.1 DUF3015 family protein -
  EQ844_RS05495 (EQ844_05495) - 1164760..1166652 (+) 1893 WP_000055516.1 DUF4105 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=293580 EQ844_RS05465 WP_000203219.1 1161144..1161809(-) (crp) [Acinetobacter baumannii strain 11A14CRGN003]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=293580 EQ844_RS05465 WP_000203219.1 1161144..1161809(-) (crp) [Acinetobacter baumannii strain 11A14CRGN003]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425