Detailed information NTG0293471

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DK843_RS14520
• Genome accession: NZ_CP029554
• Coordinates: 3010867..3012183 (+)
• Length: 438 a.a.
• NCBI ID: WP_114073619.1
• Uniprot ID: A0A344UJF5
• Organism: Chromobacterium phragmitis strain IIBBL 274-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3005867..3017183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK843_RS14505 (DK843_14505)	-	3006416..3006874 (-)	459	WP_114073616.1	GNAT family N-acetyltransferase	-
DK843_RS14510 (DK843_14510)	parC	3006973..3009324 (+)	2352	WP_114073617.1	DNA topoisomerase IV subunit A	-
DK843_RS14515 (DK843_14515)	-	3009324..3010874 (+)	1551	WP_114073618.1	sensor histidine kinase	-
DK843_RS14520 (DK843_14520)	pilR	3010867..3012183 (+)	1317	WP_114073619.1	sigma-54-dependent transcriptional regulator	Regulator
DK843_RS14525 (DK843_14525)	-	3012196..3013575 (-)	1380	WP_168191859.1	radical SAM/SPASM domain-containing protein	-
DK843_RS23425	-	3013742..3013915 (-)	174	WP_168191860.1	hypothetical protein	-
DK843_RS14530 (DK843_14530)	-	3014006..3015307 (-)	1302	WP_114073621.1	hypothetical protein	-
DK843_RS14535 (DK843_14535)	-	3015343..3016620 (-)	1278	WP_114073622.1	cupin domain-containing protein	-
DK843_RS23430	-	3016736..3016894 (-)	159	WP_168191861.1	hypothetical protein	-

Sequence

Protein

• Length: 438 a.a.
• Molecular weight: 47781.85 Da
• Isoelectric Point: 6.9636

>NTDB_id=293471 DK843_RS14520 WP_114073619.1 3010867..3012183(+) (pilR) [Chromobacterium phragmitis strain IIBBL 274-1]
MTKTLRVLIVDDEPDIRELLELTLLKMGLAPVCAANVAEAKAALDGGGFDLALTDMRLPDGDGLDVVNHIGERGLDLPIA
VITAHGSAGNAVRAMKAGAFDYLQKPVSLAQLRSLVKSALKVEVPSARPSARQRLLGESPAIQEVLRLAEKLSRSQAAVS
IGGESGTGKEQAARLIHELGPRADKPFVAVNCGAIPESLMESEFFGYRKGAFTGADADRDGFFQLAQGGTLFLDEVAELP
LAMQVKLLRAIQEKAVRKLGASQEEAADVRIICATHRDLAARVEAGQFRQDLYYRLNVLPLRMPPLRELRDDIPLFADRL
LQRFGGASAPRLTADARRALQDHAYPGNFRELENILERAVALAASPSLSRDDLQLTPCVEYSPEPGSGEPLQDYLDRVER
EAIVKALEGTRYNRTQAAKKLGVTFRSLRYRMERLGVK

Nucleotide

• Length: 1317 bp

>NTDB_id=293471 DK843_RS14520 WP_114073619.1 3010867..3012183(+) (pilR) [Chromobacterium phragmitis strain IIBBL 274-1]
ATGACTAAGACTCTGCGCGTATTGATCGTCGACGACGAGCCGGACATCCGGGAACTCTTGGAGCTGACGCTGTTGAAAAT
GGGCCTGGCTCCGGTTTGCGCCGCCAACGTGGCCGAGGCCAAGGCCGCGCTCGACGGCGGCGGCTTCGACCTGGCGCTGA
CCGACATGCGGCTGCCGGACGGAGATGGCCTGGATGTGGTCAACCATATCGGCGAACGCGGGCTGGACCTGCCCATCGCC
GTGATCACCGCCCATGGCAGCGCCGGCAACGCGGTGCGGGCGATGAAGGCCGGCGCCTTCGACTACCTGCAAAAGCCGGT
CAGCCTGGCGCAGTTGCGCAGCCTGGTGAAGAGCGCGCTGAAAGTGGAGGTCCCCTCTGCCAGACCATCCGCGCGGCAGC
GGTTGCTGGGCGAGTCGCCGGCGATACAGGAGGTGTTGCGGCTGGCGGAAAAGCTGTCGCGCAGCCAGGCGGCGGTGTCT
ATCGGCGGCGAATCCGGCACCGGCAAGGAACAGGCGGCGCGGCTGATCCACGAGCTGGGGCCGCGCGCGGACAAGCCCTT
CGTCGCCGTCAACTGCGGCGCGATCCCGGAGAGCCTGATGGAGAGCGAGTTCTTCGGCTATCGCAAAGGCGCCTTCACCG
GCGCCGATGCCGACCGCGACGGTTTCTTCCAGCTGGCGCAAGGCGGCACCTTGTTCCTGGATGAGGTGGCCGAGTTGCCG
CTGGCGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGGCGGTGCGCAAGCTGGGCGCCAGCCAGGAAGAGGCGGC
GGATGTTCGCATCATCTGCGCCACTCACCGCGATCTGGCGGCGCGGGTGGAGGCGGGGCAGTTCCGCCAGGACCTGTACT
ATCGCCTCAATGTGCTGCCGCTGCGCATGCCGCCGCTGAGAGAACTGCGCGACGATATCCCGCTGTTTGCCGATCGCTTG
CTGCAGCGTTTCGGCGGCGCGTCCGCGCCGCGGCTGACTGCCGACGCGCGCCGCGCGCTGCAGGACCACGCCTACCCCGG
CAATTTCCGCGAGCTGGAAAACATCTTGGAGCGCGCGGTGGCCTTGGCCGCCTCGCCTTCGCTGTCCCGCGACGATCTGC
AGCTGACGCCCTGCGTCGAATACAGCCCGGAACCCGGTAGCGGCGAACCGCTGCAGGACTACCTTGACCGCGTCGAGCGC
GAGGCCATCGTCAAGGCGCTGGAGGGCACCCGTTACAATCGCACCCAGGCCGCGAAGAAACTGGGCGTCACTTTTCGTTC
CTTGCGTTACCGGATGGAGCGGCTGGGGGTGAAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Bacterial regulatory protein, Fis family (HTH_8) (395-434)

• Response regulator receiver domain (Response_reg) (7-116)

3D structure

• AlphaFold DB: A0A344UJF5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.636	100	0.589
pilR	Acinetobacter baumannii strain A118	44.105	100	0.461
luxO	Vibrio cholerae strain A1552	40.695	92.009	0.374