Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DK842_RS18295 Genome accession   NZ_CP029495
Coordinates   3837045..3837839 (+) Length   264 a.a.
NCBI ID   WP_114062747.1    Uniprot ID   -
Organism   Chromobacterium phragmitis strain IIBBL 112-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3832045..3842839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK842_RS18265 (DK842_18265) - 3832095..3832817 (-) 723 WP_114062741.1 metallophosphoesterase -
  DK842_RS18270 (DK842_18270) - 3832845..3833498 (-) 654 WP_114062742.1 HD domain-containing protein -
  DK842_RS18275 (DK842_18275) - 3833653..3834501 (-) 849 WP_114062743.1 GNAT family N-acetyltransferase -
  DK842_RS18280 (DK842_18280) - 3834498..3835109 (-) 612 WP_114062744.1 AraC family transcriptional regulator -
  DK842_RS18285 (DK842_18285) pgeF 3835222..3835959 (-) 738 WP_114062745.1 peptidoglycan editing factor PgeF -
  DK842_RS18290 (DK842_18290) rluD 3835949..3837046 (-) 1098 WP_114062746.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DK842_RS18295 (DK842_18295) comL 3837045..3837839 (+) 795 WP_114062747.1 outer membrane protein assembly factor BamD Machinery gene
  DK842_RS18300 (DK842_18300) - 3837907..3838998 (-) 1092 WP_332835409.1 nitronate monooxygenase -
  DK842_RS18305 (DK842_18305) - 3839018..3839209 (+) 192 WP_114062749.1 hypothetical protein -
  DK842_RS18310 (DK842_18310) rpsB 3839369..3840097 (+) 729 WP_114062750.1 30S ribosomal protein S2 -
  DK842_RS18315 (DK842_18315) tsf 3840171..3841037 (+) 867 WP_104947082.1 translation elongation factor Ts -
  DK842_RS18320 (DK842_18320) pyrH 3841128..3841847 (+) 720 WP_021477858.1 UMP kinase -
  DK842_RS18325 (DK842_18325) frr 3841926..3842483 (+) 558 WP_114063795.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30386.60 Da        Isoelectric Point: 7.4526

>NTDB_id=293304 DK842_RS18295 WP_114062747.1 3837045..3837839(+) (comL) [Chromobacterium phragmitis strain IIBBL 112-1]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPNSTYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDAHRVLAL
NYPQSQYLNKPWMVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=293304 DK842_RS18295 WP_114062747.1 3837045..3837839(+) (comL) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGAAAAGATACGTTGTTGCAGCTATGTTGGTGATGGTGGGGCTTGCCGGGTGTGCAACCACGGAAACCTACGACGAAAC
GCGCGGTTGGACCGTGGAGAAGCTCTATTCGGAAGCCCACGATGAGTTGAACAGCGGGAATTATACCCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGTTTCCCCTACGGCCGCTACGCGCAGCAGGCCCAAATGGACCTGGCCTATACCCATTAC
AAGGACGGCGAGCCCGAGTTGGCCATCGCTTCCGCCGATCGCTTCATCAAGCTGCATCCCACGCATCCCAACCTTGATTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGATGATTCGGGCCTGCTCGCCAAATGGGCCGGCCAGGACATGAGCG
AGCGGGATCCGCGCGCCGCGCGCGAGGCCTTCGCCGCCTTCCGCGAGCTGACAACCCGCTTCCCCAATAGCACTTACGCC
CCGGACGCCAAGGCGAAGATGATTCGCCTGGTGGACGCGCTGGGCGGCAACGAGATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCGGCGAACCGAGCCCAGGGCGTGGTCAAGGATTATGCCAACACCAAGTACCCGGAAGAGG
CGCTGGCCATCATGGTGGCGGCTTACGACAAGCTGCAGTTGCCGCAGCTGCGCGACGACGCCCACCGGGTGCTGGCGCTG
AACTACCCGCAGAGCCAGTATCTGAACAAGCCGTGGATGGTCGAAGAGATGCCGTGGTGGAAACTATGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.427

100

0.591
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58

Multiple sequence alignment