Detailed information NTG0293298

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DK842_RS08970
• Genome accession: NZ_CP029495
• Coordinates: 1885638..1886954 (+)
• Length: 438 a.a.
• NCBI ID: WP_114061153.1
• Uniprot ID: -
• Organism: Chromobacterium phragmitis strain IIBBL 112-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1880638..1891954

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK842_RS08955 (DK842_08955)	-	1881187..1881645 (-)	459	WP_114061150.1	GNAT family N-acetyltransferase	-
DK842_RS08960 (DK842_08960)	parC	1881744..1884095 (+)	2352	WP_114061151.1	DNA topoisomerase IV subunit A	-
DK842_RS08965 (DK842_08965)	-	1884095..1885645 (+)	1551	WP_114061152.1	PAS domain-containing sensor histidine kinase	-
DK842_RS08970 (DK842_08970)	pilR	1885638..1886954 (+)	1317	WP_114061153.1	sigma-54 dependent transcriptional regulator	Regulator
DK842_RS08975 (DK842_08975)	-	1886967..1888346 (-)	1380	WP_168194854.1	radical SAM/SPASM domain-containing protein	-
DK842_RS23415	-	1888513..1888686 (-)	174	WP_168191860.1	hypothetical protein	-
DK842_RS08980 (DK842_08980)	-	1888777..1890078 (-)	1302	WP_114061155.1	hypothetical protein	-
DK842_RS08985 (DK842_08985)	-	1890114..1891391 (-)	1278	WP_168194855.1	cupin domain-containing protein	-
DK842_RS23420	-	1891507..1891665 (-)	159	WP_168191861.1	hypothetical protein	-

Sequence

Protein

• Length: 438 a.a.
• Molecular weight: 47839.89 Da
• Isoelectric Point: 6.6587

>NTDB_id=293298 DK842_RS08970 WP_114061153.1 1885638..1886954(+) (pilR) [Chromobacterium phragmitis strain IIBBL 112-1]
MTKTLRVLIVDDEPDIRELLELTLLKMGLAPVCAANVAEAKAALDGGGFDLALTDMRLPDGDGLDVVNHIGERGLDLPIA
VITAHGSADNAVRAMKAGAFDYLQKPVSLAQLRSLVKSALKVEVPSARPSARQRLLGESPAIQEVLRLAEKLSRSQAAVS
IGGESGTGKEQAARLIHELGPRADKPFVAVNCGAIPESLMESEFFGYRKGAFTGADADRDGFFQLAQGGTLFLDEVAELP
LAMQVKLLRAIQEKAVRKLGASQEEAADVRIICATHRDLAARVEAGQFRQDLYYRLNVLPLRMPPLRELRDDIPLFADRL
LQRFGGASAPRLTADARRALQDHAYPGNFRELENILERAVALAASPSLSRDDLQLTPCVEYSPEPGSGEPLQDYLDRVER
EAIVKALEGTRYNRTQAAKKLGVTFRSLRYRMERLGVK

Nucleotide

• Length: 1317 bp

>NTDB_id=293298 DK842_RS08970 WP_114061153.1 1885638..1886954(+) (pilR) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGACTAAGACTCTGCGCGTATTGATCGTCGACGACGAGCCGGACATCCGGGAACTCTTGGAGCTGACGCTGTTGAAAAT
GGGCCTGGCTCCGGTTTGCGCCGCCAACGTGGCCGAGGCCAAGGCCGCGCTCGACGGCGGCGGCTTCGACCTGGCGCTGA
CCGACATGCGGCTGCCGGACGGAGATGGCCTGGATGTGGTCAACCATATCGGCGAACGCGGGCTGGACCTGCCCATCGCC
GTGATCACCGCCCATGGCAGCGCCGACAACGCGGTGCGGGCGATGAAGGCCGGCGCCTTCGACTACCTGCAAAAGCCGGT
CAGCCTGGCGCAGTTGCGCAGCCTGGTGAAGAGCGCGCTGAAAGTGGAGGTCCCGTCTGCCAGACCATCCGCGCGGCAGC
GGTTGCTGGGCGAGTCGCCGGCGATACAGGAGGTGTTGCGGCTGGCGGAAAAGCTGTCGCGCAGCCAGGCGGCGGTGTCT
ATCGGCGGCGAATCCGGCACCGGCAAGGAACAGGCGGCGCGGCTGATCCACGAGCTGGGGCCGCGCGCGGACAAGCCCTT
CGTCGCCGTCAACTGCGGCGCGATCCCGGAAAGCCTGATGGAGAGCGAGTTCTTCGGCTATCGCAAAGGCGCCTTCACCG
GCGCCGATGCCGACCGCGACGGTTTCTTCCAGCTGGCGCAAGGCGGCACCTTGTTCCTGGATGAGGTGGCCGAGTTGCCG
CTGGCGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGGCGGTGCGCAAGCTGGGCGCCAGCCAGGAAGAGGCGGC
GGATGTTCGCATCATCTGCGCCACTCACCGCGATCTGGCGGCGCGGGTGGAGGCGGGGCAGTTCCGCCAGGACCTGTACT
ATCGCCTCAATGTACTGCCGCTGCGCATGCCGCCGCTGAGAGAACTGCGCGACGATATCCCGCTGTTTGCCGATCGCTTG
CTGCAGCGTTTCGGCGGCGCGTCCGCGCCGCGGCTGACTGCCGACGCGCGCCGCGCGCTGCAGGACCACGCCTACCCCGG
CAATTTCCGCGAGCTGGAAAACATCCTGGAGCGCGCGGTGGCCTTGGCCGCCTCGCCTTCGCTGTCCCGCGACGATCTGC
AGCTGACGCCCTGCGTCGAATACAGCCCGGAACCCGGTAGCGGCGAACCGCTGCAGGACTACCTTGACCGCGTCGAGCGC
GAGGCCATCGTCAAGGCGCTGGAGGGCACCCGTTACAATCGCACCCAGGCCGCGAAGAAACTGGGCGTCACTTTTCGTTC
CTTGCGTTACCGGATGGAGCGGCTGGGGGTGAAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Bacterial regulatory protein, Fis family (HTH_8) (395-434)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.864	100	0.591
pilR	Acinetobacter baumannii strain A118	44.323	100	0.463
luxO	Vibrio cholerae strain A1552	40.943	92.009	0.377