Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DK181_RS07850 Genome accession   NZ_CP029490
Coordinates   1626427..1627236 (-) Length   269 a.a.
NCBI ID   WP_002960999.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain SL1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621427..1632236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS07830 (DK182_07830) - 1621495..1621869 (+) 375 Protein_1493 hypothetical protein -
  DK181_RS07835 (DK182_07835) - 1622134..1622682 (-) 549 WP_002961004.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DK181_RS07840 (DK182_07840) trkA 1623318..1624667 (+) 1350 WP_002961003.1 Trk system potassium transporter TrkA -
  DK181_RS07845 (DK182_07845) - 1624678..1626117 (+) 1440 WP_002961001.1 TrkH family potassium uptake protein -
  DK181_RS07850 (DK182_07850) vicX 1626427..1627236 (-) 810 WP_002960999.1 MBL fold metallo-hydrolase Regulator
  DK181_RS07855 (DK182_07855) vicK 1627229..1628590 (-) 1362 WP_002960997.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DK181_RS07860 (DK182_07860) vicR 1628583..1629290 (-) 708 WP_002960995.1 response regulator YycF Regulator
  DK181_RS07865 (DK182_07865) - 1629516..1630280 (+) 765 WP_002960993.1 amino acid ABC transporter ATP-binding protein -
  DK181_RS07870 (DK182_07870) - 1630294..1631118 (+) 825 WP_002960992.1 transporter substrate-binding domain-containing protein -
  DK181_RS07875 (DK182_07875) - 1631134..1631841 (+) 708 WP_002960990.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30151.09 Da        Isoelectric Point: 5.9129

>NTDB_id=293170 DK181_RS07850 WP_002960999.1 1626427..1627236(-) (vicX) [Streptococcus sobrinus strain SL1]
MTNQGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITSLLAEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYGMP
IYANEKTWQTMDAHNMIGKVDPEQKHTFERGKVMTLGDIDIESFGVSHDAIDPQFYRFMKDDKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRSGAYPWSLKQRILSDKGHLSNEDGSETMIRTIGNRTKKIYLGHLSKENNIKELAHMTMES
NLTQADFGVGHDFKVLDTSPDEATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=293170 DK181_RS07850 WP_002960999.1 1626427..1627236(-) (vicX) [Streptococcus sobrinus strain SL1]
ATGACTAATCAAGGTTTTAAATACAGTATTTTAGCTTCGGGCTCCTCAGGGAACTCCTTTTACTTGGAAACGCCCAAGAA
GAAGCTCCTGATTGATGCAGGACTCTCAGGTAAGAAGATTACCAGTCTCCTTGCTGAAATTGACCGCAAGCCAGAAGATT
TGGATGCTATTTTGGTCACCCATGAGCACAAGGACCATATCCACGGTGTCGGGGTCTTGGCCCGTAAGTACGGCATGCCC
ATCTATGCCAACGAAAAGACCTGGCAGACCATGGATGCCCACAATATGATTGGTAAGGTTGACCCCGAGCAAAAGCACAC
ATTTGAGCGAGGTAAGGTCATGACCCTCGGGGACATTGATATTGAGAGCTTCGGCGTCAGCCACGATGCCATTGACCCTC
AATTCTACCGCTTTATGAAGGACGATAAGAGCTTTGTCATGCTGACGGATACAGGCTATGTCAGTGATCGGATGGCTGGA
TTGATTGAAAATGCGGACGGCTACCTGATTGAGTCCAACCATGATATTGAAATTCTGCGTTCAGGAGCCTATCCATGGAG
CCTTAAACAAAGGATCCTGTCTGATAAGGGGCATCTGTCTAATGAAGATGGCTCTGAAACCATGATTCGCACAATTGGCA
ACCGCACCAAGAAGATTTATCTGGGGCATCTCAGTAAGGAAAACAATATTAAAGAGCTGGCTCATATGACCATGGAATCA
AATTTGACACAAGCTGATTTTGGCGTTGGCCATGACTTCAAAGTTTTGGACACTTCGCCGGATGAAGCAACTCCTCTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

79.182

100

0.792

Multiple sequence alignment