Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | DJ564_RS28095 | Genome accession | NZ_CP029482 |
| Coordinates | 5951838..5953184 (+) | Length | 448 a.a. |
| NCBI ID | WP_109634945.1 | Uniprot ID | A0A2U8TY16 |
| Organism | Pseudomonas sp. 31-12 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5946838..5958184
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ564_RS28070 (DJ564_28070) | pgeF | 5947056..5947781 (-) | 726 | WP_109634938.1 | peptidoglycan editing factor PgeF | - |
| DJ564_RS28075 (DJ564_28075) | rluD | 5947778..5948740 (-) | 963 | WP_007942311.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| DJ564_RS28080 (DJ564_28080) | - | 5948892..5949914 (+) | 1023 | WP_109634940.1 | outer membrane protein assembly factor BamD | - |
| DJ564_RS28085 (DJ564_28085) | - | 5950029..5950262 (+) | 234 | WP_109634942.1 | PP0621 family protein | - |
| DJ564_RS28090 (DJ564_28090) | pilS | 5950252..5951841 (+) | 1590 | WP_109634943.1 | PAS domain-containing sensor histidine kinase | Regulator |
| DJ564_RS28095 (DJ564_28095) | pilR | 5951838..5953184 (+) | 1347 | WP_109634945.1 | sigma-54 dependent transcriptional regulator | Regulator |
| DJ564_RS28100 (DJ564_28100) | thiO | 5953233..5954333 (-) | 1101 | WP_109634946.1 | glycine oxidase ThiO | - |
| DJ564_RS28105 (DJ564_28105) | - | 5954391..5954792 (-) | 402 | WP_109634948.1 | type IV pilin protein | - |
| DJ564_RS28110 (DJ564_28110) | - | 5954807..5957899 (-) | 3093 | WP_109634950.1 | pilus assembly protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 49964.28 Da Isoelectric Point: 6.5149
>NTDB_id=293097 DJ564_RS28095 WP_109634945.1 5951838..5953184(+) (pilR) [Pseudomonas sp. 31-12]
MNTSPRPKVLIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLTRETFDLCLTDMRLPDGTGLELVQYIQQRYPQVP
VAMITAYGNLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLTAAGSASNAIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRSAQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAIRSVGGQQEVVVDVRILCATHKDLDAEVSAERFRQDLYYRLNVIELRVPPLRERRDDIEPLA
SHVLKRLAAGSGQPAAKLHPLALDALKSYRFPGNVRELENVLERAYTLCENKQIEASDLRLAEGNCTAENGVADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD
MNTSPRPKVLIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLTRETFDLCLTDMRLPDGTGLELVQYIQQRYPQVP
VAMITAYGNLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLTAAGSASNAIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRSAQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAIRSVGGQQEVVVDVRILCATHKDLDAEVSAERFRQDLYYRLNVIELRVPPLRERRDDIEPLA
SHVLKRLAAGSGQPAAKLHPLALDALKSYRFPGNVRELENVLERAYTLCENKQIEASDLRLAEGNCTAENGVADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=293097 DJ564_RS28095 WP_109634945.1 5951838..5953184(+) (pilR) [Pseudomonas sp. 31-12]
TTGAACACGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAGATCACCCTGGG
ACGGATGAAACTCGATACCTACAGTGCCCGCAACCTTGGCGAAGCCCAGGCCTTGTTGACACGGGAGACATTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGTCTTGAGCTGGTGCAGTACATCCAGCAGCGTTACCCACAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAACCTCGAAACGGCGATCAATGCACTCAAGGCAGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGACACGCCTGCGCGAACTGGTCACCAGCGCCCTGCGTTTGACGGCCGCGGGCAGCGCCAGTAACGCAA
TCGATCGCCGGTTGCTGGGCGATTCACTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGCAAGGAATTGGTCGCCCGACTGATTCACGAACAAGGCCCGCGGTCTGC
TCAACCATTCGTCCCGGTCAACTGCGGGGCGATTCCGTCGGAGTTGATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCA
GTTTCAGTGGCGCCATCGAAGACAAACCCGGGCTGTTTCAGGCAGCCCATGGCGGCACACTGTTTCTCGACGAGGTCGCT
GACTTGCCCTTGGCGATGCAGGTCAAACTGCTCCGGGCCATTCAGGAGAAGGCCATTCGCAGCGTCGGCGGGCAGCAAGA
AGTGGTGGTCGACGTGCGTATCCTGTGCGCCACCCACAAAGACCTCGACGCTGAAGTCAGCGCCGAACGCTTTCGCCAGG
ATTTGTACTATCGGTTGAACGTGATCGAACTCCGCGTTCCCCCATTGCGCGAGCGCCGCGACGACATCGAACCGCTGGCC
AGTCATGTGCTCAAGCGTCTGGCGGCCGGCAGCGGCCAACCCGCCGCGAAGCTCCACCCACTCGCTCTCGACGCGCTGAA
AAGTTACCGCTTCCCAGGCAACGTGCGGGAGCTGGAGAACGTGCTGGAGCGGGCTTACACCCTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGACTGGCCGAAGGCAACTGCACCGCAGAGAACGGCGTGGCGGACCTGACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAACGTCGAACGCAAACTGATCCTGCAGGCATTGGAGGAAACCCGCTGGAACCGCACAGCGGC
GGCTCAGCGGTTGAATCTCTCATTCCGGTCGATGCGCTACAGGCTCAAGAAACTCGGCCTGGATTGA
TTGAACACGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAGATCACCCTGGG
ACGGATGAAACTCGATACCTACAGTGCCCGCAACCTTGGCGAAGCCCAGGCCTTGTTGACACGGGAGACATTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGTCTTGAGCTGGTGCAGTACATCCAGCAGCGTTACCCACAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAACCTCGAAACGGCGATCAATGCACTCAAGGCAGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGACACGCCTGCGCGAACTGGTCACCAGCGCCCTGCGTTTGACGGCCGCGGGCAGCGCCAGTAACGCAA
TCGATCGCCGGTTGCTGGGCGATTCACTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGCAAGGAATTGGTCGCCCGACTGATTCACGAACAAGGCCCGCGGTCTGC
TCAACCATTCGTCCCGGTCAACTGCGGGGCGATTCCGTCGGAGTTGATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCA
GTTTCAGTGGCGCCATCGAAGACAAACCCGGGCTGTTTCAGGCAGCCCATGGCGGCACACTGTTTCTCGACGAGGTCGCT
GACTTGCCCTTGGCGATGCAGGTCAAACTGCTCCGGGCCATTCAGGAGAAGGCCATTCGCAGCGTCGGCGGGCAGCAAGA
AGTGGTGGTCGACGTGCGTATCCTGTGCGCCACCCACAAAGACCTCGACGCTGAAGTCAGCGCCGAACGCTTTCGCCAGG
ATTTGTACTATCGGTTGAACGTGATCGAACTCCGCGTTCCCCCATTGCGCGAGCGCCGCGACGACATCGAACCGCTGGCC
AGTCATGTGCTCAAGCGTCTGGCGGCCGGCAGCGGCCAACCCGCCGCGAAGCTCCACCCACTCGCTCTCGACGCGCTGAA
AAGTTACCGCTTCCCAGGCAACGTGCGGGAGCTGGAGAACGTGCTGGAGCGGGCTTACACCCTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGACTGGCCGAAGGCAACTGCACCGCAGAGAACGGCGTGGCGGACCTGACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAACGTCGAACGCAAACTGATCCTGCAGGCATTGGAGGAAACCCGCTGGAACCGCACAGCGGC
GGCTCAGCGGTTGAATCTCTCATTCCGGTCGATGCGCTACAGGCTCAAGAAACTCGGCCTGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.458 |
98.884 |
0.786 |
| pilR | Acinetobacter baumannii strain A118 |
50 |
100 |
0.516 |