Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DJ564_RS28090 Genome accession   NZ_CP029482
Coordinates   5950252..5951841 (+) Length   529 a.a.
NCBI ID   WP_109634943.1    Uniprot ID   A0A2U8TZ15
Organism   Pseudomonas sp. 31-12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5945252..5956841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ564_RS28070 (DJ564_28070) pgeF 5947056..5947781 (-) 726 WP_109634938.1 peptidoglycan editing factor PgeF -
  DJ564_RS28075 (DJ564_28075) rluD 5947778..5948740 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DJ564_RS28080 (DJ564_28080) - 5948892..5949914 (+) 1023 WP_109634940.1 outer membrane protein assembly factor BamD -
  DJ564_RS28085 (DJ564_28085) - 5950029..5950262 (+) 234 WP_109634942.1 PP0621 family protein -
  DJ564_RS28090 (DJ564_28090) pilS 5950252..5951841 (+) 1590 WP_109634943.1 PAS domain-containing sensor histidine kinase Regulator
  DJ564_RS28095 (DJ564_28095) pilR 5951838..5953184 (+) 1347 WP_109634945.1 sigma-54 dependent transcriptional regulator Regulator
  DJ564_RS28100 (DJ564_28100) thiO 5953233..5954333 (-) 1101 WP_109634946.1 glycine oxidase ThiO -
  DJ564_RS28105 (DJ564_28105) - 5954391..5954792 (-) 402 WP_109634948.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58521.31 Da        Isoelectric Point: 6.9388

>NTDB_id=293096 DJ564_RS28090 WP_109634943.1 5950252..5951841(+) (pilS) [Pseudomonas sp. 31-12]
MIAETSSPGGKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLAFAEDELLRSGSWLYLVLNILLVVFWENTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVAALGIVGFSFLLSFSHPVSPSEYLQAGTLG
ALCFAAALLVQGLISRLEVSEHLARQRASEVVGLEALNALILHRMRTGILVLDDQRRVQLANHSALSLLGQKNLDGQLID
DYSPALVERLQLWFNNPTLRPQSLKIASSGLELQPSFIALDQSPNHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELKGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGATDR
QLIHLHIGSGDFKTLMDPNQLTQILDNLLRNAWRHSALNHDLAQVWLELFVEPDSQLPTLEVRDNGPGVAPDQQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFNPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=293096 DJ564_RS28090 WP_109634943.1 5950252..5951841(+) (pilS) [Pseudomonas sp. 31-12]
GTGATCGCTGAGACGTCCAGTCCCGGCGGCAAACAGGCTCAGCGACTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGCATCACTCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGGCTTTCGCCGAGGACGAACTGCTGCGCA
GTGGCAGCTGGTTATACCTGGTGCTGAACATCCTGCTGGTGGTCTTTTGGGAGAACACCCGACGGCCGGCCCAGCTTTTC
AGCCTTGCCCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCGGGCGGCGTGGCCAGCGCCATCGGCAACTT
GCTCATCGTTTCGGTGGCGATCAGCAACACCCTGTTGCGCGGGCGTATCGGCCTGTTGATCGCGGCGGTTGCTGCTCTGG
GCATCGTCGGTTTCAGCTTCCTCCTGAGCTTCAGCCACCCCGTCAGTCCCAGCGAGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGTTTTGCCGCTGCATTGCTGGTGCAGGGCCTGATCAGTCGACTGGAGGTCAGCGAACACCTCGCCCGGCAGCG
CGCCAGTGAAGTGGTGGGCCTGGAAGCGCTCAACGCGTTGATCCTGCACCGCATGCGCACGGGCATTCTGGTGCTCGACG
ACCAGCGGCGGGTCCAACTGGCCAATCACAGCGCCTTGAGCTTGCTGGGGCAGAAAAACCTCGACGGCCAGTTGATCGAC
GATTACTCACCAGCCTTGGTCGAACGCCTGCAACTATGGTTCAACAACCCAACGCTGCGCCCGCAAAGCCTGAAAATCGC
CAGCAGTGGCCTGGAACTGCAACCCAGCTTCATTGCCCTGGACCAAAGCCCGAATCATCAGACTCTGGTGTTTCTCGAGG
ACCTTGCCCAGATCGCTCAACAAGCGCAGCAACTGAAACTCGCCGCACTCGGTCGTCTGACTGCCGGTATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGCTATTACAGGAATCCGAGGAACTGAAGGGCGCAGATCGGCG
TCTGACGCAGATTATCCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTGCCACAAAGGCTCGATCTGAAGCCGTGGCTGGAGCACTTCGTCGCCGAAACCCGTGAAGGGGCAACTGATCGT
CAATTGATTCACCTGCACATCGGATCGGGCGACTTCAAAACCCTGATGGACCCGAATCAGCTGACCCAGATTCTCGACAA
CCTGTTGCGCAACGCCTGGCGCCATAGCGCGCTGAATCACGACCTGGCGCAAGTATGGCTCGAATTGTTTGTCGAACCCG
ACAGCCAGTTACCGACGCTCGAGGTCCGGGACAACGGTCCCGGTGTGGCGCCGGACCAACAGACGCATTTGTTCGAACCC
TTCTTCACCACCAGTAGCCAGGGCACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAATCCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8TZ15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599

Multiple sequence alignment