Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BPUM_RS18430 Genome accession   NC_009848
Coordinates   3687365..3687910 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus SAFR-032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3682365..3692910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS18405 (BPUM_3714) - 3682638..3683246 (-) 609 WP_012011905.1 alpha/beta hydrolase -
  BPUM_RS18410 (BPUM_3715) - 3683243..3684235 (-) 993 WP_012011906.1 ring-cleaving dioxygenase -
  BPUM_RS18415 (BPUM_3716) - 3684405..3685922 (-) 1518 WP_012011907.1 ABC transporter permease/substrate-binding protein -
  BPUM_RS18420 (BPUM_3717) - 3685915..3686880 (-) 966 WP_012011908.1 ABC transporter ATP-binding protein -
  BPUM_RS18425 (BPUM_3718) rpsR 3687082..3687321 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  BPUM_RS18430 (BPUM_3719) ssbA 3687365..3687910 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  BPUM_RS18435 (BPUM_3720) rpsF 3687947..3688234 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  BPUM_RS18440 (BPUM_3721) ychF 3688343..3689443 (-) 1101 WP_012011909.1 redox-regulated ATPase YchF -
  BPUM_RS18445 (BPUM_3722) - 3689660..3689866 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  BPUM_RS18450 (BPUM_3723) - 3690152..3691471 (+) 1320 WP_041816102.1 phage hydrolase -
  BPUM_RS18455 (BPUM_3724) - 3691487..3691897 (+) 411 WP_012011912.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=29309 BPUM_RS18430 WP_003215157.1 3687365..3687910(-) (ssbA) [Bacillus pumilus SAFR-032]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=29309 BPUM_RS18430 WP_003215157.1 3687365..3687910(-) (ssbA) [Bacillus pumilus SAFR-032]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAATGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAGAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment