Detailed information NTG0293089

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: DJ564_RS24030
• Genome accession: NZ_CP029482
• Coordinates: 5092532..5094766 (-)
• Length: 744 a.a.
• NCBI ID: WP_109633875.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 31-12
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5087532..5099766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DJ564_RS23995 (DJ564_23995)	murB	5087908..5088927 (-)	1020	WP_109633867.1	UDP-N-acetylmuramate dehydrogenase	-
DJ564_RS24000 (DJ564_24000)	-	5088924..5089388 (-)	465	WP_109633869.1	low molecular weight protein-tyrosine-phosphatase	-
DJ564_RS24005 (DJ564_24005)	kdsB	5089388..5090152 (-)	765	WP_109633870.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DJ564_RS24010 (DJ564_24010)	-	5090149..5090334 (-)	186	WP_010461887.1	Trm112 family protein	-
DJ564_RS24015 (DJ564_24015)	lpxK	5090360..5091370 (-)	1011	WP_109633872.1	tetraacyldisaccharide 4'-kinase	-
DJ564_RS24020 (DJ564_24020)	-	5091370..5091801 (-)	432	WP_109633873.1	biopolymer transporter ExbD	-
DJ564_RS24025 (DJ564_24025)	exbB	5091798..5092433 (-)	636	WP_162556235.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
DJ564_RS24030 (DJ564_24030)	comA	5092532..5094766 (-)	2235	WP_109633875.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
DJ564_RS24035 (DJ564_24035)	-	5094902..5095420 (+)	519	WP_109633877.1	DUF2062 domain-containing protein	-
DJ564_RS24040 (DJ564_24040)	-	5095492..5096271 (-)	780	WP_010461900.1	ABC transporter permease	-
DJ564_RS24045 (DJ564_24045)	-	5096268..5097200 (-)	933	WP_109633878.1	ABC transporter ATP-binding protein	-
DJ564_RS24050 (DJ564_24050)	-	5097334..5097957 (-)	624	WP_109633880.1	glutathione S-transferase family protein	-
DJ564_RS24055 (DJ564_24055)	-	5098001..5098660 (-)	660	WP_109633882.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81728.04 Da
• Isoelectric Point: 10.1457

>NTDB_id=293089 DJ564_RS24030 WP_109633875.1 5092532..5094766(-) (comA) [Pseudomonas sp. 31-12]
MRTGMMALALGLLALRFLPVLPPVWLWMLLPVVGLMLLPFRTYPLAFFLFGFSWACASAQWALDDRLPLKLDGETRWVEG
RVTGLPQNAEGVVRFELTDSQSRSTRLPRHLRLAWYDGPLVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGQRLASAQWAWRDSIRQRLQAVDAQGRTGALTALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPSRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNGVLVLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLFILGLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPIPYVGEGLLWLAGGLVDLLFKGLALMAGRLPAWVPVAVPLWIWALGMLGAFLLLLPAGVPLRPLGWPLLLLLV
FPPRPMLPDGVVDVWQLDVGQGLAILVRTRHHTVLYDTGPRFGDFDLGDRVVLPTLRKLGVSGIDLMLISHADADHAGGA
RAVANGLPVARVLSGDPEALPAELHAEGCESGRQWRWDGVNFELWQWTSAHDSNQKSCVLQIEANGERLLLTGDIDTAAE
RALLDSPLAVPTDWLQSPHHGSRSSSSMALLTALQPRAVLISRGQGNSFGHPHPTVMARYQKRGMAIYDSAAHGAIRLQL
GRFKPPWTMRLERHFWRNPPLSGP

Nucleotide

• Length: 2235 bp

>NTDB_id=293089 DJ564_RS24030 WP_109633875.1 5092532..5094766(-) (comA) [Pseudomonas sp. 31-12]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGGTTTTTACCCGTTTTACCGCCGGTCTGGTTATG
GATGTTGCTGCCGGTTGTGGGTTTGATGCTGCTGCCGTTTCGGACTTACCCGTTGGCGTTCTTCCTGTTCGGCTTCAGTT
GGGCGTGTGCGAGTGCGCAGTGGGCGCTGGATGATCGCCTGCCGCTGAAGCTCGACGGAGAGACTCGTTGGGTCGAAGGT
CGGGTGACGGGCCTGCCGCAGAATGCCGAAGGTGTGGTGCGCTTCGAGCTGACCGACAGTCAGTCCCGAAGCACGCGGCT
GCCCCGGCATCTGCGTCTTGCCTGGTATGACGGACCGCTCGTCAACAGCGGCGAACGCTGGCGACTGGCGGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAACCCGCATGCCTTCGACTACGACGCCTGGCTGTTGGCGCAACGCATCGGCGCTACCGGG
ACGGTCAAGGATGGCCAGCGGCTTGCCTCCGCCCAATGGGCCTGGCGCGACAGCATTCGCCAACGCTTGCAAGCCGTCGA
TGCTCAAGGCCGGACCGGGGCACTGACGGCGTTGGTGTTGGGCGACGGCGGCGGGCTGAGCCGAGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTATTGGTGATTTCCGGGCAGCACATCGGGCTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCCCGCTATGGTCTGTGGCCGAGCCGTTTGCCCTGGTTGCCATGGGCCTGCGGACTGGCGTTTGCTGC
CGCGCTGGGTTACGGGTTGCTGGCCGGTTTCGAGGTGCCGGTGCGCCGGGCCTGCGTGATGATCGGTCTGGTGCTGTTGT
GGCGGCTGCGGTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCAACGGCGTTTTAGTGCTCGACCCGCTG
GCGAGCCTGCAGCCGGGGTTCTGGTTGTCCTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTTGGTGGGCGGCTGGGCCC
CTGGCGCTGGTGGCAAACCTGGACCCGGGCGCAATGGCTGATTGCGATCGGACTGTGCCCGTTGCTGTTTATCCTTGGGT
TGCCGATCAGCGTCAGTGGGCCGGTGGCCAATCTGCTGGCAGTGCCGTGGGTCAGTCTGGTGGTATTGCCGCCAGCCTTG
CTCGGGACGTTGCTATTGCCCATCCCTTATGTGGGCGAGGGATTGCTGTGGTTGGCGGGCGGTCTGGTCGATCTGTTGTT
CAAGGGGTTGGCATTGATGGCCGGACGACTGCCTGCCTGGGTGCCGGTCGCGGTGCCGCTGTGGATTTGGGCGCTCGGCA
TGCTGGGCGCCTTTCTACTATTACTGCCGGCCGGTGTGCCGTTGCGCCCGTTGGGCTGGCCGCTGCTGCTGTTGCTGGTT
TTTCCACCTCGCCCGATGCTTCCCGATGGCGTCGTCGACGTCTGGCAGCTGGACGTCGGCCAGGGCCTGGCCATCCTGGT
GCGAACCCGTCATCACACGGTGTTGTATGACACTGGGCCGCGTTTCGGAGATTTTGACCTCGGCGACCGGGTGGTCCTAC
CGACATTGCGCAAACTGGGCGTATCCGGGATCGACCTGATGCTCATCAGTCACGCCGACGCCGATCATGCCGGCGGTGCA
CGCGCGGTCGCCAATGGATTGCCGGTGGCGCGGGTCCTGAGCGGCGATCCCGAAGCGCTGCCAGCCGAATTGCACGCCGA
GGGCTGTGAAAGCGGCCGGCAATGGCGCTGGGACGGTGTGAACTTCGAGCTCTGGCAATGGACATCCGCCCACGACAGCA
ATCAAAAATCCTGTGTTTTGCAGATCGAAGCCAATGGCGAGCGATTGCTGTTGACCGGCGACATCGACACCGCTGCCGAA
CGGGCGTTGCTCGACAGTCCGCTCGCCGTGCCGACCGATTGGCTGCAATCGCCGCACCACGGCAGCCGCAGTTCCTCTTC
GATGGCGCTGCTCACCGCGTTGCAACCCAGGGCTGTGCTGATTTCCCGCGGCCAGGGCAATTCCTTTGGTCACCCGCATC
CCACGGTCATGGCGCGTTATCAAAAGCGCGGGATGGCGATCTACGACAGCGCCGCGCATGGCGCCATTCGTCTGCAACTG
GGACGGTTCAAGCCGCCATGGACGATGCGTCTGGAACGGCATTTCTGGCGTAATCCGCCACTGTCCGGCCCATAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-680)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.849	96.237	0.605
comA	Ralstonia pseudosolanacearum GMI1000	33.902	100	0.374