Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DJ564_RS24025 Genome accession   NZ_CP029482
Coordinates   5091798..5092433 (-) Length   211 a.a.
NCBI ID   WP_162556235.1    Uniprot ID   -
Organism   Pseudomonas sp. 31-12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5086798..5097433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ564_RS23990 (DJ564_23990) - 5087191..5087661 (-) 471 WP_109633866.1 (2Fe-2S)-binding protein -
  DJ564_RS23995 (DJ564_23995) murB 5087908..5088927 (-) 1020 WP_109633867.1 UDP-N-acetylmuramate dehydrogenase -
  DJ564_RS24000 (DJ564_24000) - 5088924..5089388 (-) 465 WP_109633869.1 low molecular weight protein-tyrosine-phosphatase -
  DJ564_RS24005 (DJ564_24005) kdsB 5089388..5090152 (-) 765 WP_109633870.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DJ564_RS24010 (DJ564_24010) - 5090149..5090334 (-) 186 WP_010461887.1 Trm112 family protein -
  DJ564_RS24015 (DJ564_24015) lpxK 5090360..5091370 (-) 1011 WP_109633872.1 tetraacyldisaccharide 4'-kinase -
  DJ564_RS24020 (DJ564_24020) - 5091370..5091801 (-) 432 WP_109633873.1 biopolymer transporter ExbD -
  DJ564_RS24025 (DJ564_24025) exbB 5091798..5092433 (-) 636 WP_162556235.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DJ564_RS24030 (DJ564_24030) comA 5092532..5094766 (-) 2235 WP_109633875.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DJ564_RS24035 (DJ564_24035) - 5094902..5095420 (+) 519 WP_109633877.1 DUF2062 domain-containing protein -
  DJ564_RS24040 (DJ564_24040) - 5095492..5096271 (-) 780 WP_010461900.1 ABC transporter permease -
  DJ564_RS24045 (DJ564_24045) - 5096268..5097200 (-) 933 WP_109633878.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22897.12 Da        Isoelectric Point: 6.8770

>NTDB_id=293088 DJ564_RS24025 WP_162556235.1 5091798..5092433(-) (exbB) [Pseudomonas sp. 31-12]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=293088 DJ564_RS24025 WP_162556235.1 5091798..5092433(-) (exbB) [Pseudomonas sp. 31-12]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAGCTGCGCGCCAACTCACCGTTGGGCGAAATCCTGGCGGCGGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCGCGGGTGATTCATGAACTCGAGCGCTACAT
CAATGCGCTGGGCACCATCGCCGCGATGGCCCCGTTGTTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCGGTGTTGGCGGGCGGTATCTCCAAGGCGCTGATCACCACGGCC
GCCGGCCTGATGGTCGGTATCCCGGCAGTGTTTTTTCACCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment