Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DKL56_RS00040 Genome accession   NZ_CP029476
Coordinates   9711..10232 (+) Length   173 a.a.
NCBI ID   WP_109714942.1    Uniprot ID   -
Organism   Lactobacillus apis strain ESL0185     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4711..15232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKL56_RS00030 (DKL56_00030) gyrA 6669..9164 (+) 2496 WP_109714941.1 DNA gyrase subunit A -
  DKL56_RS00035 (DKL56_00035) rpsF 9365..9658 (+) 294 WP_074426152.1 30S ribosomal protein S6 -
  DKL56_RS00040 (DKL56_00040) ssb 9711..10232 (+) 522 WP_109714942.1 single-stranded DNA-binding protein Machinery gene
  DKL56_RS00045 (DKL56_00045) rpsR 10255..10494 (+) 240 WP_046305698.1 30S ribosomal protein S18 -
  DKL56_RS00050 (DKL56_00050) - 10842..12941 (+) 2100 WP_109714943.1 hypothetical protein -
  DKL56_RS00055 (DKL56_00055) - 12938..13570 (+) 633 WP_109714944.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18909.59 Da        Isoelectric Point: 4.4075

>NTDB_id=293016 DKL56_RS00040 WP_109714942.1 9711..10232(+) (ssb) [Lactobacillus apis strain ESL0185]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNNDGQRVYVTEVVVDNFALLESRKEREARSQNGGFTPTDNGNFGNSNTNNPQNMGTSNQNSPVGNQPDSMQDPFAGS
GDTIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=293016 DKL56_RS00040 WP_109714942.1 9711..10232(+) (ssb) [Lactobacillus apis strain ESL0185]
ATGATTAATCGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGATCGTCAATATACCAATGCTCAAGGCGAGAGAGGTGCGGATTTTATCAGCTGTGTCATTT
GGAGAAAATCAGCAGAAAACTTCTGCAATTTTACATCTAAAGGTTCGCTTGTTGGTATTGACGGCCGAATTCAAACCAGA
AGTTACGATAATAATGATGGGCAAAGAGTGTATGTAACTGAAGTCGTCGTAGACAACTTCGCATTGCTTGAATCACGCAA
AGAACGTGAAGCCCGTAGTCAAAATGGTGGATTTACACCAACTGACAACGGAAACTTTGGTAATTCAAATACCAATAATC
CGCAAAATATGGGAACATCTAATCAGAATAGCCCAGTAGGTAATCAGCCAGATTCTATGCAGGATCCGTTTGCTGGTTCG
GGTGATACAATTGATATCTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.712

100

0.642
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.889

100

0.561

Multiple sequence alignment