Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EQI48_RS05165 Genome accession   NZ_CP035164
Coordinates   992140..992787 (+) Length   215 a.a.
NCBI ID   WP_024573282.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104005     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 987140..997787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI48_RS05150 (EQI48_05150) glpD 987313..988980 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  EQI48_RS05155 (EQI48_05155) pgcA 989110..990855 (+) 1746 WP_029726344.1 phosphoglucomutase -
  EQI48_RS05160 (EQI48_05160) yhcY 991004..992143 (+) 1140 WP_029726343.1 two-component system sensor histidine kinase YhcY -
  EQI48_RS05165 (EQI48_05165) vraR 992140..992787 (+) 648 WP_024573282.1 two-component system response regulator YhcZ Regulator
  EQI48_RS05170 (EQI48_05170) yhdA 992784..993308 (+) 525 WP_029726342.1 FMN-dependent NADPH-azoreductase -
  EQI48_RS05175 (EQI48_05175) yhdB 993323..993565 (-) 243 WP_003233373.1 YhdB family protein -
  EQI48_RS05180 (EQI48_05180) yhdC 993766..994089 (+) 324 WP_029726341.1 YqzG/YhdC family protein -
  EQI48_RS05185 (EQI48_05185) lytF 994131..995600 (-) 1470 WP_029726340.1 peptidoglycan endopeptidase LytF -
  EQI48_RS05190 (EQI48_05190) nsrR 995753..996193 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24150.76 Da        Isoelectric Point: 6.0922

>NTDB_id=292969 EQI48_RS05165 WP_024573282.1 992140..992787(+) (vraR) [Bacillus subtilis strain SRCM104005]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETDIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=292969 EQI48_RS05165 WP_024573282.1 992140..992787(+) (vraR) [Bacillus subtilis strain SRCM104005]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGGATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCTGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.865

100

0.414

Multiple sequence alignment