Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   B7L90_RS17100 Genome accession   NZ_CP029473
Coordinates   3382361..3382696 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Hx05     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3377361..3387696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L90_RS17050 (B7L90_11105) comGC 3377595..3377861 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  B7L90_RS17055 (B7L90_11100) comGD 3377851..3378288 (+) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  B7L90_RS17060 (B7L90_11095) comGE 3378272..3378586 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  B7L90_RS17065 (B7L90_11090) comGF 3378495..3378995 (+) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  B7L90_RS17070 (B7L90_11085) comGG 3378996..3379373 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  B7L90_RS17075 (B7L90_11080) - 3379430..3379609 (+) 180 WP_003153093.1 YqzE family protein -
  B7L90_RS17080 (B7L90_11075) - 3379649..3379978 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  B7L90_RS17085 (B7L90_11070) tapA 3380237..3380908 (+) 672 WP_025852919.1 amyloid fiber anchoring/assembly protein TapA -
  B7L90_RS17090 (B7L90_11065) - 3380880..3381464 (+) 585 WP_025852917.1 signal peptidase I -
  B7L90_RS17095 (B7L90_11060) - 3381528..3382313 (+) 786 WP_003153102.1 TasA family protein -
  B7L90_RS17100 (B7L90_11055) sinR 3382361..3382696 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  B7L90_RS17105 (B7L90_11050) sinI 3382730..3382903 (-) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  B7L90_RS17110 (B7L90_11045) - 3383080..3383874 (-) 795 WP_014305407.1 YqhG family protein -
  B7L90_RS17115 (B7L90_11040) - 3383892..3385562 (-) 1671 WP_003153107.1 SNF2-related protein -
  B7L90_RS17120 (B7L90_11035) gcvT 3385985..3387085 (+) 1101 WP_003153108.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=292968 B7L90_RS17100 WP_003153104.1 3382361..3382696(-) (sinR) [Bacillus velezensis strain Hx05]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=292968 B7L90_RS17100 WP_003153104.1 3382361..3382696(-) (sinR) [Bacillus velezensis strain Hx05]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment