Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BPUM_RS10790 Genome accession   NC_009848
Coordinates   2187005..2188741 (-) Length   578 a.a.
NCBI ID   WP_012010522.1    Uniprot ID   A8FF08
Organism   Bacillus pumilus SAFR-032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182005..2193741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS10770 (BPUM_2152) - 2182883..2183983 (-) 1101 WP_012010518.1 Rap family tetratricopeptide repeat protein -
  BPUM_RS10775 (BPUM_2153) - 2183971..2184168 (-) 198 WP_041815709.1 hypothetical protein -
  BPUM_RS10780 (BPUM_2154) spo0A 2184440..2185243 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  BPUM_RS10785 (BPUM_2155) spoIVB 2185529..2186806 (-) 1278 WP_012010521.1 SpoIVB peptidase -
  BPUM_RS10790 (BPUM_2156) recN 2187005..2188741 (-) 1737 WP_012010522.1 DNA repair protein RecN Machinery gene
  BPUM_RS10795 (BPUM_2157) ahrC 2188775..2189224 (-) 450 WP_012010523.1 transcriptional regulator AhrC/ArgR -
  BPUM_RS10800 (BPUM_2158) - 2189385..2190239 (-) 855 WP_012010524.1 TlyA family RNA methyltransferase -
  BPUM_RS10805 (BPUM_2159) dxs 2190236..2192137 (-) 1902 WP_012010525.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BPUM_RS10810 (BPUM_2160) - 2192288..2193178 (-) 891 WP_012010526.1 polyprenyl synthetase family protein -
  BPUM_RS10815 (BPUM_2161) - 2193168..2193428 (-) 261 WP_012010527.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64806.60 Da        Isoelectric Point: 4.7769

>NTDB_id=29284 BPUM_RS10790 WP_012010522.1 2187005..2188741(-) (recN) [Bacillus pumilus SAFR-032]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDASDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELDQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDTHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=29284 BPUM_RS10790 WP_012010522.1 2187005..2188741(-) (recN) [Bacillus pumilus SAFR-032]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACGGGGGAAACAGGTGCAGGGAAATCCATCATGATCGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAAGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCCGATCACCCTGTATTTGCTTTA
TGCGAGGAGCAAGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATCTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAACATG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTGCTCGATCAATTTGGTGCAGAAGAAATTGCACCTGCTTTG
TCGCAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAAAATGAGCAAGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGACGAGAAGC
TTCAAGAAGAGCGTCATCAGATCAGCAACTACGAAAAGATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAACAGGGGGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGATCAGGTTTCTGAAATCAACGATGATCTGAAAAA
ACTATCCGAACAAGTGTCGAACTCTTACTATTTATTAGAAGATTCGACGTTCCAAATGAGAAGCATGCTGGATCAATTAG
AATTTGACCCTGCACGTCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACGACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACACTCATCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCACTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCT
ATTCGGTATGCGCCTTTTAGCAGCACAGATAATCCGCTCCTAGATGGAAAGCCCGTCCAGCTCGGAAAAAACGGAATTGA
TCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCGTCCGGTGGAGAAATTT
CACGTGTGATGCTCGCTGTGAAAAGTATCTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGTGTAAGTGGCAGAGTTGCACAGGCGATTGCTGAGAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCAAAACGCTCTAAAGCTGGTAGAACACTGACAA
GTGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACA
AAACAGCACGCAAAAGAATTGCTCCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FF08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.74

100

0.747

Multiple sequence alignment