Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BPUM_RS10780 Genome accession   NC_009848
Coordinates   2184440..2185243 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus SAFR-032     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2179440..2190243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS10760 (BPUM_2150) - 2181643..2181879 (+) 237 WP_012010516.1 DUF2627 domain-containing protein -
  BPUM_RS10765 (BPUM_2151) - 2181915..2182652 (-) 738 WP_012010517.1 glycerophosphodiester phosphodiesterase -
  BPUM_RS10770 (BPUM_2152) - 2182883..2183983 (-) 1101 WP_012010518.1 Rap family tetratricopeptide repeat protein -
  BPUM_RS10775 (BPUM_2153) - 2183971..2184168 (-) 198 WP_041815709.1 hypothetical protein -
  BPUM_RS10780 (BPUM_2154) spo0A 2184440..2185243 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  BPUM_RS10785 (BPUM_2155) spoIVB 2185529..2186806 (-) 1278 WP_012010521.1 SpoIVB peptidase -
  BPUM_RS10790 (BPUM_2156) recN 2187005..2188741 (-) 1737 WP_012010522.1 DNA repair protein RecN Machinery gene
  BPUM_RS10795 (BPUM_2157) ahrC 2188775..2189224 (-) 450 WP_012010523.1 transcriptional regulator AhrC/ArgR -
  BPUM_RS10800 (BPUM_2158) - 2189385..2190239 (-) 855 WP_012010524.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=29283 BPUM_RS10780 WP_012010520.1 2184440..2185243(-) (spo0A) [Bacillus pumilus SAFR-032]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=29283 BPUM_RS10780 WP_012010520.1 2184440..2185243(-) (spo0A) [Bacillus pumilus SAFR-032]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCGCATTTAGATGGCCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTCATTATGCTAACAGCGTTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGATTTGGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTTCTTCGAAATAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCAATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATTGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GGGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGTATGTCTAAAGCGAAACCAACCAATTCTGAATTTATCGCTATGGTGGCTGATCGTCTACGCTTGGAGCATAGAGCTAG
CTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888

Multiple sequence alignment