Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DKG76_RS18755 Genome accession   NZ_CP029465
Coordinates   3731496..3732185 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3726496..3737185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS18720 (DKG76_18720) flgN 3726678..3727160 (-) 483 WP_003235451.1 flagellar protein FlgN -
  DKG76_RS18725 (DKG76_18725) flgM 3727176..3727441 (-) 266 Protein_3634 flagellar biosynthesis anti-sigma factor FlgM -
  DKG76_RS18730 (DKG76_18730) - 3727521..3727940 (-) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  DKG76_RS18735 (DKG76_18735) comFC 3728013..3728735 (-) 723 WP_003235457.1 ComF family protein Machinery gene
  DKG76_RS18740 (DKG76_18740) comFB 3728699..3728995 (-) 297 WP_003235460.1 late competence protein ComFB -
  DKG76_RS18745 (DKG76_18745) comFA 3729063..3730445 (-) 1383 WP_032731806.1 ATP-dependent helicase ComFA Machinery gene
  DKG76_RS18750 (DKG76_18750) - 3730553..3731398 (-) 846 WP_003235465.1 DegV family protein -
  DKG76_RS18755 (DKG76_18755) degU 3731496..3732185 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DKG76_RS18760 (DKG76_18760) degS 3732268..3733425 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  DKG76_RS18765 (DKG76_18765) - 3733643..3734296 (+) 654 WP_003235469.1 YigZ family protein -
  DKG76_RS18770 (DKG76_18770) - 3734296..3735453 (+) 1158 WP_003235471.1 LCP family protein -
  DKG76_RS18775 (DKG76_18775) - 3735525..3736601 (-) 1077 WP_003235474.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=292764 DKG76_RS18755 WP_003219701.1 3731496..3732185(-) (degU) [Bacillus inaquosorum strain KCTC 13429]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=292764 DKG76_RS18755 WP_003219701.1 3731496..3732185(-) (degU) [Bacillus inaquosorum strain KCTC 13429]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGCGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCTGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment