Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DKG76_RS18745 Genome accession   NZ_CP029465
Coordinates   3729063..3730445 (-) Length   460 a.a.
NCBI ID   WP_032731806.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3724063..3735445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS18710 (DKG76_18710) flgL 3724236..3725132 (-) 897 WP_003235447.1 flagellar hook-associated protein FlgL -
  DKG76_RS18715 (DKG76_18715) flgK 3725142..3726659 (-) 1518 WP_003235449.1 flagellar hook-associated protein FlgK -
  DKG76_RS18720 (DKG76_18720) flgN 3726678..3727160 (-) 483 WP_003235451.1 flagellar protein FlgN -
  DKG76_RS18725 (DKG76_18725) flgM 3727176..3727441 (-) 266 Protein_3634 flagellar biosynthesis anti-sigma factor FlgM -
  DKG76_RS18730 (DKG76_18730) - 3727521..3727940 (-) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  DKG76_RS18735 (DKG76_18735) comFC 3728013..3728735 (-) 723 WP_003235457.1 ComF family protein Machinery gene
  DKG76_RS18740 (DKG76_18740) comFB 3728699..3728995 (-) 297 WP_003235460.1 late competence protein ComFB -
  DKG76_RS18745 (DKG76_18745) comFA 3729063..3730445 (-) 1383 WP_032731806.1 ATP-dependent helicase ComFA Machinery gene
  DKG76_RS18750 (DKG76_18750) - 3730553..3731398 (-) 846 WP_003235465.1 DegV family protein -
  DKG76_RS18755 (DKG76_18755) degU 3731496..3732185 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DKG76_RS18760 (DKG76_18760) degS 3732268..3733425 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  DKG76_RS18765 (DKG76_18765) - 3733643..3734296 (+) 654 WP_003235469.1 YigZ family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52159.24 Da        Isoelectric Point: 9.8789

>NTDB_id=292763 DKG76_RS18745 WP_032731806.1 3729063..3730445(-) (comFA) [Bacillus inaquosorum strain KCTC 13429]
MIMPAEKNISFSKELQQTLQSRQLLRTELPFSDEMIEWHIKNGYIAAQNSISVNKLGYRCNRCGQNDQRYFSFYHSSGKN
QLYCRSCVMMGRVSEDVPLYSWIEEVEPNWQPIKLTWNGQLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTLNGQLHSVRIPARHHKKPLPEPRFVWCGNWKKKLNRNKVPLAVKR
WIAFHVKEGRPVFLFVPSVSVMEKAASCFKDVNCRTAFVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNDLTAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=292763 DKG76_RS18745 WP_032731806.1 3729063..3730445(-) (comFA) [Bacillus inaquosorum strain KCTC 13429]
CTGATTATGCCAGCTGAAAAGAACATTTCTTTCTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCAGTTGCTCAGAAC
TGAACTTCCATTTTCCGATGAGATGATTGAATGGCATATCAAAAATGGCTATATCGCTGCTCAAAACTCTATATCCGTAA
ATAAGCTGGGGTATAGGTGTAATAGGTGCGGCCAAAATGACCAGCGGTATTTTTCTTTTTATCATTCATCTGGAAAGAAT
CAGCTGTATTGCCGTTCTTGTGTCATGATGGGCAGAGTGAGTGAAGATGTTCCTTTATATTCATGGATAGAGGAGGTTGA
ACCCAATTGGCAGCCTATCAAGCTTACGTGGAATGGCCAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAATTG
AGGCCATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAGATGCTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGACTGCGTGTTTGTATTGCCACACCCCGCACCGATGTTGTATTAGAGCTAGCTCCGAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTATGGAGGAAGCGAGGACAAAGGGCGGTTATCTCCGCTTATGA
TTTCCACTACACATCAACTCTTGCGATATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACTCTTGTTTACCTAAGTGCAACACC
CCCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGTTACACTCAGTTCGGATTCCAGCAAGACACCACAAAAAACCTT
TGCCAGAACCGCGCTTTGTATGGTGCGGAAACTGGAAAAAGAAATTAAACCGAAACAAAGTTCCGTTAGCTGTAAAAAGA
TGGATAGCGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTATTTGTTCCCTCCGTTTCTGTTATGGAAAAGGCAGCTTC
CTGCTTTAAAGATGTCAATTGCCGAACAGCGTTTGTGCATGCGGAAGATAAGCACAGAAAAGAAAAAGTACAGCAGTTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTTACGGTTCCCAAGGTGCAGACAGGTGTA
TTAGGTGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGTCATAAAGAGCATGC
GGATGGTGATGTCATTTTCTTTCACTACGGAAAAACTAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
ACTTGACAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

90.652

100

0.907

Multiple sequence alignment