Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   DKG76_RS18735 Genome accession   NZ_CP029465
Coordinates   3728013..3728735 (-) Length   240 a.a.
NCBI ID   WP_003235457.1    Uniprot ID   A0A9W5LL87
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3723013..3733735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS18700 (DKG76_18700) fliW 3723162..3723593 (-) 432 WP_003235444.1 flagellar assembly protein FliW -
  DKG76_RS18705 (DKG76_18705) - 3723626..3724189 (-) 564 WP_003235445.1 DUF6470 family protein -
  DKG76_RS18710 (DKG76_18710) flgL 3724236..3725132 (-) 897 WP_003235447.1 flagellar hook-associated protein FlgL -
  DKG76_RS18715 (DKG76_18715) flgK 3725142..3726659 (-) 1518 WP_003235449.1 flagellar hook-associated protein FlgK -
  DKG76_RS18720 (DKG76_18720) flgN 3726678..3727160 (-) 483 WP_003235451.1 flagellar protein FlgN -
  DKG76_RS18725 (DKG76_18725) flgM 3727176..3727441 (-) 266 Protein_3634 flagellar biosynthesis anti-sigma factor FlgM -
  DKG76_RS18730 (DKG76_18730) - 3727521..3727940 (-) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  DKG76_RS18735 (DKG76_18735) comFC 3728013..3728735 (-) 723 WP_003235457.1 ComF family protein Machinery gene
  DKG76_RS18740 (DKG76_18740) comFB 3728699..3728995 (-) 297 WP_003235460.1 late competence protein ComFB -
  DKG76_RS18745 (DKG76_18745) comFA 3729063..3730445 (-) 1383 WP_032731806.1 ATP-dependent helicase ComFA Machinery gene
  DKG76_RS18750 (DKG76_18750) - 3730553..3731398 (-) 846 WP_003235465.1 DegV family protein -
  DKG76_RS18755 (DKG76_18755) degU 3731496..3732185 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DKG76_RS18760 (DKG76_18760) degS 3732268..3733425 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27386.62 Da        Isoelectric Point: 8.8055

>NTDB_id=292762 DKG76_RS18735 WP_003235457.1 3728013..3728735(-) (comFC) [Bacillus inaquosorum strain KCTC 13429]
MPNEAGGGIHKLICLLCDSQFSQAVTWSALFLLKPDETVCHSCRSKFKKITGQICTLCGRPQFVHAVCRDCEVWKSRVSD
SLLLRQNRSVYTYNEMMKETLSRFKFRGDAEIINAFKSDFSSAFSEVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLNFAARCLLEKGKARSVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=292762 DKG76_RS18735 WP_003235457.1 3728013..3728735(-) (comFC) [Bacillus inaquosorum strain KCTC 13429]
ATGCCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTCTATTGTGCGATTCACAATTTTCTCAAGCTGTTACATG
GAGCGCCCTTTTTTTATTAAAGCCGGACGAAACGGTCTGTCATTCCTGCAGAAGCAAATTTAAGAAAATCACAGGACAAA
TCTGCACCTTGTGCGGCAGACCTCAATTCGTTCATGCGGTATGCAGAGATTGCGAGGTGTGGAAATCAAGGGTCAGTGAC
AGTTTGCTGCTCCGCCAAAACCGTTCAGTTTACACATATAATGAAATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAGCCTTCTCAGAGGTTTACCCCGATAAGCATTTTG
TTCTCGTTCCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGTGGATTTAACCAGGCGCAGCTCCTGGCAGAATGCTTA
GACCGTCCTATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
GGAGCGTATTTTTGATACAAAAAACAACTCAGCCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGAATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCCGTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.833

100

0.908

Multiple sequence alignment