Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DKG76_RS16735 Genome accession   NZ_CP029465
Coordinates   3336501..3337145 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3331501..3342145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS16700 (DKG76_16700) - 3332693..3333124 (+) 432 WP_003241054.1 Na(+)/H(+) antiporter subunit B -
  DKG76_RS16705 (DKG76_16705) - 3333124..3333465 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  DKG76_RS16710 (DKG76_16710) - 3333458..3334939 (+) 1482 WP_032732272.1 Na+/H+ antiporter subunit D -
  DKG76_RS16715 (DKG76_16715) - 3334945..3335421 (+) 477 WP_003241050.1 Na+/H+ antiporter subunit E -
  DKG76_RS16720 (DKG76_16720) - 3335421..3335705 (+) 285 WP_003241049.1 Na(+)/H(+) antiporter subunit F1 -
  DKG76_RS16725 (DKG76_16725) mnhG 3335689..3336063 (+) 375 WP_003241048.1 monovalent cation/H(+) antiporter subunit G -
  DKG76_RS16730 (DKG76_16730) - 3336102..3336482 (-) 381 WP_019259331.1 hotdog fold thioesterase -
  DKG76_RS16735 (DKG76_16735) comA 3336501..3337145 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  DKG76_RS16740 (DKG76_16740) comP 3337226..3339523 (-) 2298 WP_032732271.1 histidine kinase Regulator
  DKG76_RS16745 (DKG76_16745) comX 3339531..3339692 (-) 162 WP_003241045.1 competence pheromone ComX -
  DKG76_RS16750 (DKG76_16750) - 3339707..3340567 (-) 861 WP_032732270.1 polyprenyl synthetase family protein -
  DKG76_RS16755 (DKG76_16755) degQ 3340751..3340891 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  DKG76_RS22010 - 3341071..3341238 (+) 168 WP_119914210.1 hypothetical protein -
  DKG76_RS16760 (DKG76_16760) - 3341351..3341719 (+) 369 WP_003241042.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=292757 DKG76_RS16735 WP_003220716.1 3336501..3337145(-) (comA) [Bacillus inaquosorum strain KCTC 13429]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=292757 DKG76_RS16735 WP_003220716.1 3336501..3337145(-) (comA) [Bacillus inaquosorum strain KCTC 13429]
GTGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAATCGAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTATTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAATCAAGAAATCGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment