Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DKG76_RS12730 Genome accession   NZ_CP029465
Coordinates   2601231..2602961 (-) Length   576 a.a.
NCBI ID   WP_003236888.1    Uniprot ID   A0A9W5LJG7
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596231..2607961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS21950 - 2596816..2596950 (+) 135 WP_003236876.1 hypothetical protein -
  DKG76_RS12710 (DKG76_12710) - 2597023..2598141 (+) 1119 WP_003236879.1 NADH-dependent flavin oxidoreductase -
  DKG76_RS22480 - 2598202..2598336 (-) 135 WP_003236881.1 hypothetical protein -
  DKG76_RS12715 (DKG76_12715) - 2598376..2598555 (-) 180 WP_003236884.1 hypothetical protein -
  DKG76_RS12720 (DKG76_12720) spo0A 2598696..2599499 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  DKG76_RS12725 (DKG76_12725) spoIVB 2599775..2601055 (-) 1281 WP_003236887.1 SpoIVB peptidase -
  DKG76_RS12730 (DKG76_12730) recN 2601231..2602961 (-) 1731 WP_003236888.1 DNA repair protein RecN Machinery gene
  DKG76_RS12735 (DKG76_12735) argR 2602997..2603446 (-) 450 WP_003236889.1 arginine repressor ArgR -
  DKG76_RS12740 (DKG76_12740) - 2603544..2604389 (-) 846 WP_003236890.1 TlyA family RNA methyltransferase -
  DKG76_RS12745 (DKG76_12745) dxs 2604386..2606287 (-) 1902 WP_003236891.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DKG76_RS12750 (DKG76_12750) - 2606468..2607358 (-) 891 WP_003236893.1 polyprenyl synthetase family protein -
  DKG76_RS12755 (DKG76_12755) - 2607348..2607602 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64609.43 Da        Isoelectric Point: 4.7094

>NTDB_id=292734 DKG76_RS12730 WP_003236888.1 2601231..2602961(-) (recN) [Bacillus inaquosorum strain KCTC 13429]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVFDIC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGASV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPIVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADMHLYIAKELKDGRTTTHVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=292734 DKG76_RS12730 WP_003236888.1 2601231..2602961(-) (recN) [Bacillus inaquosorum strain KCTC 13429]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGAGGATCATCTGAAT
TTGTCAGATATGGAGAAGCAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCCGTTTTTGATATATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTTATGAGAAGGGATATCAGCACGAGTGGAAAAAGCGTTTGCCG
GGTTAATGGCAAGCTTGTCACGATTGCCTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGTGCGCTCCAA
GCATATCAGGAAGGATACCAGCGTTACATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAATGAGGATGAACAGCTCC
AAGAAGAACGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCGTATAACGCGCTTCGCAGTGAG
CAAGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAACTTGAAGATATATCCGATATTAATGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATCTTCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGACGAGCTTGAGT
ATGATCCGGAACGCCTGAATTATATTGAAACACGTCTTAATGAAATCAAACAGCTGAAACGAAAATATGGTGCATCTGTT
GAGGACATTTTAGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGTCACCTTCAAAGCTT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTTTCACAAATCAGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAGTCAACGTTTGATACGGAATTTAAGGTC
AGAACAGCGTCCCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATAGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGTGAACCGCTAAAATCTCTTTCGAAAGTCGCTTCCGGGGGAGAGTTGTCTCGGG
TAATGCTTGCCATAAAAAGCATTTTTTCCTCTCAGCAGGATGTGACGTCGATTATATTCGATGAGGTCGATACCGGTGTA
AGCGGCAGAGTCGCCCAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATATGCACCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACATGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCAGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.569

100

0.976

Multiple sequence alignment