Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DKG76_RS12720 Genome accession   NZ_CP029465
Coordinates   2598696..2599499 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2593696..2604499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS12695 (DKG76_12695) - 2594742..2595473 (-) 732 WP_003236869.1 glycerophosphodiester phosphodiesterase -
  DKG76_RS12700 (DKG76_12700) - 2595552..2596172 (-) 621 WP_080030792.1 N-acetylmuramoyl-L-alanine amidase -
  DKG76_RS12705 (DKG76_12705) - 2596192..2596488 (-) 297 WP_003236873.1 hypothetical protein -
  DKG76_RS21950 - 2596816..2596950 (+) 135 WP_003236876.1 hypothetical protein -
  DKG76_RS12710 (DKG76_12710) - 2597023..2598141 (+) 1119 WP_003236879.1 NADH-dependent flavin oxidoreductase -
  DKG76_RS22480 - 2598202..2598336 (-) 135 WP_003236881.1 hypothetical protein -
  DKG76_RS12715 (DKG76_12715) - 2598376..2598555 (-) 180 WP_003236884.1 hypothetical protein -
  DKG76_RS12720 (DKG76_12720) spo0A 2598696..2599499 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  DKG76_RS12725 (DKG76_12725) spoIVB 2599775..2601055 (-) 1281 WP_003236887.1 SpoIVB peptidase -
  DKG76_RS12730 (DKG76_12730) recN 2601231..2602961 (-) 1731 WP_003236888.1 DNA repair protein RecN Machinery gene
  DKG76_RS12735 (DKG76_12735) argR 2602997..2603446 (-) 450 WP_003236889.1 arginine repressor ArgR -
  DKG76_RS12740 (DKG76_12740) - 2603544..2604389 (-) 846 WP_003236890.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=292733 DKG76_RS12720 WP_003226427.1 2598696..2599499(-) (spo0A) [Bacillus inaquosorum strain KCTC 13429]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=292733 DKG76_RS12720 WP_003226427.1 2598696..2599499(-) (spo0A) [Bacillus inaquosorum strain KCTC 13429]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTAGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGACGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATCCGTCAGGTCAGCGGAAATGCCAGCAGCGTGACGCACCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCGCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCGTGGAGCAGAGGAAACATTGACTCCATTTCCTCATTGTTCGGCTATACAGTC
AGCATGACAAAAGCTAAACCGACAAATTCAGAGTTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment