Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DKE43_RS10690 Genome accession   NZ_CP029464
Coordinates   2025941..2026582 (-) Length   213 a.a.
NCBI ID   WP_060597210.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2020941..2031582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS10655 (DKE43_10690) - 2022063..2022494 (+) 432 WP_106043633.1 Na(+)/H(+) antiporter subunit B -
  DKE43_RS10660 (DKE43_10695) - 2022494..2022835 (+) 342 WP_106156711.1 Na(+)/H(+) antiporter subunit C -
  DKE43_RS10665 (DKE43_10700) - 2022828..2024306 (+) 1479 WP_127687101.1 Na+/H+ antiporter subunit D -
  DKE43_RS10670 (DKE43_10705) - 2024313..2024792 (+) 480 WP_066030467.1 Na+/H+ antiporter subunit E -
  DKE43_RS10675 (DKE43_10710) - 2024792..2025073 (+) 282 WP_106030437.1 Na(+)/H(+) antiporter subunit F1 -
  DKE43_RS10680 (DKE43_10715) mnhG 2025057..2025431 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  DKE43_RS10685 (DKE43_10720) - 2025528..2025917 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  DKE43_RS10690 (DKE43_10725) comA 2025941..2026582 (-) 642 WP_060597210.1 response regulator transcription factor Regulator
  DKE43_RS10695 (DKE43_10730) comP 2026663..2028969 (-) 2307 WP_127687103.1 ATP-binding protein Regulator
  DKE43_RS10700 (DKE43_10735) comX 2028983..2029165 (-) 183 WP_317615021.1 competence pheromone ComX -
  DKE43_RS10705 (DKE43_10740) - 2029134..2030057 (-) 924 WP_106071456.1 polyprenyl synthetase family protein -
  DKE43_RS10710 (DKE43_10745) degQ 2030209..2030349 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  DKE43_RS10715 (DKE43_10750) - 2030855..2031208 (+) 354 WP_060597216.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24139.58 Da        Isoelectric Point: 4.5688

>NTDB_id=292674 DKE43_RS10690 WP_060597210.1 2025941..2026582(-) (comA) [Bacillus pumilus strain ZB201701]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQLVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=292674 DKE43_RS10690 WP_060597210.1 2025941..2026582(-) (comA) [Bacillus pumilus strain ZB201701]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACTAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment