Detailed information NTG0292376

Bioinformatically predicted

Overview

• Name: uvrB
• Type: Machinery gene
• Locus tag: EM806_RS01905
• Genome accession: NZ_CP035106
• Coordinates: 375331..377307 (+)
• Length: 658 a.a.
• NCBI ID: WP_128479508.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpbs3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 370331..382307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EM806_RS01895	ggt	372354..374057 (+)	1704	WP_128479504.1	gamma-glutamyltransferase	-
EM806_RS01900	-	374341..375111 (+)	771	WP_128479506.1	HP1117 family Sel1-like repeat protein	-
EM806_RS01905	uvrB	375331..377307 (+)	1977	WP_128479508.1	excinuclease ABC subunit UvrB	Machinery gene
EM806_RS01910	-	377318..378151 (-)	834	WP_128479509.1	outer membrane protein	-
EM806_RS01915	purB	378222..379544 (-)	1323	WP_128479511.1	adenylosuccinate lyase	-
EM806_RS01920	-	379654..380598 (-)	945	WP_120836498.1	thiamine pyrophosphate-dependent enzyme	-
EM806_RS01925	-	380611..381834 (-)	1224	WP_001097078.1	2-oxoacid:ferredoxin oxidoreductase subunit alpha	-
EM806_RS01930	-	381845..382237 (-)	393	WP_000656175.1	4Fe-4S dicluster domain-containing protein	-

Sequence

Protein

• Length: 658 a.a.
• Molecular weight: 75927.42 Da
• Isoelectric Point: 6.8805

>NTDB_id=292376 EM806_RS01905 WP_128479508.1 375331..377307(+) (uvrB) [Helicobacter pylori strain Hpbs3]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQINKPTLIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKSCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKTT
QSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAKLRTL

Nucleotide

• Length: 1977 bp

>NTDB_id=292376 EM806_RS01905 WP_128479508.1 375331..377307(+) (uvrB) [Helicobacter pylori strain Hpbs3]
ATGCCTTTATTTGATTTAAAAAGCCCTTACCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCCTTAACGAAAAGCTT
GAAAAATAACAACCATTATCAAACTTTAGTGGGGGTTACAGGGAGCGGTAAAACTTATACGATGGCCAATATCATCGCTC
AAATCAATAAACCCACTCTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTCTATAGCGAGTTTAAAGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGACTACTACCAGCCTGAAAGCTATATCCCTAGAAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAATGATGATTTAGAGCGTTTGAGGTTGAGTGCGGCCACCTCACTTTTAGGTTATGATG
ATGTGATTGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCGCGCTTATAAGAGCTTTTTACTCAAGCTAGTAGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGTTTTAGAGCGACCGGAGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATCAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCTGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGTGAGAGGTTGAATTTAGCCATTAAAAGCATTGAAGATGAACTCGC
TTTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCAACCGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTTACAGGCAAAGCCCCTAATGAAACG
CCTTTTTGCTTGTTTGATTATTTAGGGATATTTGAGCGGGAGTTTTTGGTCATTGTGGATGAAAGCCATGTGAGTTTGCC
GCAGTTTGGAGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCCAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAGTTGCCAGTTCCTTTTTGTGTCCGCCACGCCCAATAAG
CTAGAATTAGAGCTTTCTAAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTATTTGATGAAATCAAGTTAGTGGTGGCTAGAGATGAAAGGGTGCTTATCA
CCACGCTCACTAAAAAAATGGCGGAAGAATTGTGCAAATATTATGCTGAATGGGGCTTGAAAGCGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGGAATCACATCATCCGCTCTTTAAGGCTTAAAGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAAGGGCTGGATTTGCCTGAAGTCTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGTG
AAACAAGCCTCATTCAAACCATGGGACGAGCCGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAAACCACT
CAAAGCATGCAAAAAGCCTTTGAAATTACGAGCTACAGGCGTGCCAAGCAAGAAGAGTTTAATAAAATTCATAATATCAC
TCCCAAAACCGTTACTCGCGCTTTAGAAGAGGAGTTGAAATTAAGAGACGATGAGATTAGAATCGCTAAAGCTTTAAAAA
AGGACAAAATCCCTAAAAGCGAAAGGGAAAAAATCATTAAAGAACTGGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGATGAAATCGCTAAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

• Ultra-violet resistance protein B (UvrB) (554-595)

• Helicase conserved C-terminal domain (Helicase_C) (445-547)

• UvrB/uvrC motif (UVR) (623-657)

• UvrB interaction domain (UvrB_inter) (159-248)

• Type III restriction enzyme, res subunit (ResIII) (15-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrB	Streptococcus pneumoniae R6	49.472	100	0.498
uvrB	Streptococcus pneumoniae D39	49.472	100	0.498
uvrB	Streptococcus pneumoniae TIGR4	49.472	100	0.498