Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DJ533_RS12795 Genome accession   NZ_CP029397
Coordinates   2169531..2170229 (+) Length   232 a.a.
NCBI ID   WP_065992475.1    Uniprot ID   -
Organism   Acinetobacter defluvii strain WCHA30     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2164531..2175229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS12775 (DJ533_12795) epsC 2165886..2166794 (-) 909 WP_065992483.1 serine O-acetyltransferase EpsC -
  DJ533_RS12780 (DJ533_12800) - 2167152..2167640 (+) 489 WP_065992479.1 rhodanese-like domain-containing protein -
  DJ533_RS12785 (DJ533_12805) - 2167941..2168741 (+) 801 WP_065992478.1 peptidoglycan DD-metalloendopeptidase family protein -
  DJ533_RS12790 (DJ533_12810) - 2168960..2169379 (-) 420 WP_065992477.1 OsmC family protein -
  DJ533_RS12795 (DJ533_12815) crp 2169531..2170229 (+) 699 WP_065992475.1 cAMP-activated global transcriptional regulator CRP Regulator
  DJ533_RS12800 (DJ533_12820) - 2170379..2171428 (+) 1050 WP_065992473.1 NADP(H)-dependent aldo-keto reductase -
  DJ533_RS12805 (DJ533_12825) - 2171485..2172621 (-) 1137 WP_065992471.1 acyl-CoA dehydrogenase family protein -
  DJ533_RS12810 (DJ533_12830) - 2172817..2173587 (-) 771 WP_065992470.1 SDR family NAD(P)-dependent oxidoreductase -
  DJ533_RS12815 (DJ533_12835) - 2173733..2174743 (+) 1011 WP_081406067.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26044.61 Da        Isoelectric Point: 4.8183

>NTDB_id=292229 DJ533_RS12795 WP_065992475.1 2169531..2170229(+) (crp) [Acinetobacter defluvii strain WCHA30]
MSSNLAQLSTDALSPGQLPESVKALLKRAHINRFPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYENFHEVSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESSYSENDDE

Nucleotide


Download         Length: 699 bp        

>NTDB_id=292229 DJ533_RS12795 WP_065992475.1 2169531..2170229(+) (crp) [Acinetobacter defluvii strain WCHA30]
ATGTCTTCTAATTTAGCACAACTTAGTACAGATGCTTTGTCGCCAGGACAACTTCCTGAATCAGTCAAAGCATTACTCAA
GCGTGCTCACATCAATCGTTTTCCGAAACGTACGACTATTGTTGATGCGGGTTCTGAGTCAAAATCGCTGTATTTAATTT
TAAAAGGATCGGTATCAATCATTTTACGCGAGGACGATGATCGTGAAATTGTGGTTGCATATCTCAATCCAGGTGATTTC
TTCGGAGAAATGGGATTATTTGAACAAAACCCACAACGTACCGCTGAAGTAAGAACCCGCGATGTTTGCGAAATTGCCGA
AATTTCTTATGAGAATTTTCATGAAGTCAGCAAACAATATCCTGACTTAAGTTATGCTGTATTTGCACAATTGGTCAGAC
GTTTAAAAAATACCACACGTAAAGTAACCGACCTTGCCTTTATTGATGTATCAGGTCGTATTGCACGTTGTTTAATTGAT
CTGTCTGCTCAACCTGAAGCAATGATTTTACCTAATGGTCGCCAAATCCGTATCACTCGCCAAGAGATTGGGCGTATTGT
GGGATGTTCTCGTGAAATGGTAGGTCGTGTTCTTAAAACCCTTGAAGAACAAGGTATGATCGAAACCGATGGGAAAGCAA
TTCTAATTTTTGATGCATCTTTAGAAGAGTCTTCATATTCAGAAAATGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.304

99.138

0.905
  crp Vibrio cholerae strain A1552

47.317

88.362

0.418
  crp Haemophilus influenzae Rd KW20

47.692

84.052

0.401

Multiple sequence alignment