Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DIZ83_RS05735 Genome accession   NZ_CP029371
Coordinates   1072576..1073205 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1067576..1078205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIZ83_RS05720 (DIZ83_05720) helD 1067818..1069872 (-) 2055 WP_001295354.1 DNA helicase IV -
  DIZ83_RS05725 (DIZ83_05725) yccF 1069995..1070441 (+) 447 WP_001261235.1 YccF domain-containing protein -
  DIZ83_RS05730 (DIZ83_05730) yccS 1070451..1072613 (+) 2163 WP_000875061.1 YccS family putative transporter -
  DIZ83_RS05735 (DIZ83_05735) sxy/tfoX 1072576..1073205 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DIZ83_RS05740 (DIZ83_05740) sulA 1073424..1073933 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DIZ83_RS05750 (DIZ83_05750) ompA 1074290..1075330 (+) 1041 WP_000750416.1 porin OmpA -
  DIZ83_RS05755 (DIZ83_05755) matP 1075406..1075858 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DIZ83_RS05760 (DIZ83_05760) ycbZ 1076044..1077804 (+) 1761 WP_000156531.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=292071 DIZ83_RS05735 WP_000839153.1 1072576..1073205(-) (sxy/tfoX) [Escherichia coli strain C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=292071 DIZ83_RS05735 WP_000839153.1 1072576..1073205(-) (sxy/tfoX) [Escherichia coli strain C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment