Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DIC78_RS15320 Genome accession   NZ_CP029364
Coordinates   3009409..3010053 (+) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain ZB201702     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004409..3015053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS15295 (DIC78_15320) - 3004835..3005203 (-) 369 WP_106022008.1 hypothetical protein -
  DIC78_RS15300 (DIC78_15325) degQ 3005664..3005804 (+) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  DIC78_RS15305 (DIC78_15330) - 3006012..3006869 (+) 858 WP_164848141.1 polyprenyl synthetase family protein -
  DIC78_RS15310 (DIC78_15335) comX 3006838..3007011 (+) 174 WP_127696529.1 competence pheromone ComX -
  DIC78_RS15315 (DIC78_15340) comP 3007025..3009328 (+) 2304 WP_127696530.1 histidine kinase Regulator
  DIC78_RS15320 (DIC78_15345) comA 3009409..3010053 (+) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  DIC78_RS15325 (DIC78_15350) - 3010071..3010451 (+) 381 WP_044158943.1 hotdog fold thioesterase -
  DIC78_RS15330 (DIC78_15355) mnhG 3010490..3010864 (-) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  DIC78_RS15335 (DIC78_15360) - 3010848..3011132 (-) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  DIC78_RS15340 (DIC78_15365) - 3011132..3011608 (-) 477 WP_024122676.1 Na+/H+ antiporter subunit E -
  DIC78_RS15345 (DIC78_15370) - 3011614..3013095 (-) 1482 WP_106022012.1 Na+/H+ antiporter subunit D -
  DIC78_RS15350 (DIC78_15375) - 3013088..3013429 (-) 342 WP_095713974.1 Na(+)/H(+) antiporter subunit C -
  DIC78_RS15355 (DIC78_15380) - 3013429..3013860 (-) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=291989 DIC78_RS15320 WP_024122680.1 3009409..3010053(+) (comA) [Bacillus halotolerans strain ZB201702]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=291989 DIC78_RS15320 WP_024122680.1 3009409..3010053(+) (comA) [Bacillus halotolerans strain ZB201702]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATAGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCCGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986

Multiple sequence alignment