Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DIC78_RS13335 Genome accession   NZ_CP029364
Coordinates   2612811..2614205 (+) Length   464 a.a.
NCBI ID   WP_106019638.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2607811..2619205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS13315 (DIC78_13340) - 2608963..2609616 (-) 654 WP_044159478.1 YigZ family protein -
  DIC78_RS13320 (DIC78_13345) degS 2609833..2610990 (+) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  DIC78_RS13325 (DIC78_13350) degU 2611073..2611762 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DIC78_RS13330 (DIC78_13355) - 2611859..2612704 (+) 846 WP_106019639.1 DegV family protein -
  DIC78_RS13335 (DIC78_13360) comFA 2612811..2614205 (+) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  DIC78_RS13340 (DIC78_13365) - 2614262..2614558 (+) 297 WP_024123028.1 late competence development ComFB family protein -
  DIC78_RS13345 (DIC78_13370) comFC 2614522..2615244 (+) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  DIC78_RS13350 (DIC78_13375) - 2615318..2615737 (+) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  DIC78_RS13355 (DIC78_13380) flgM 2615817..2616083 (+) 267 WP_106019637.1 flagellar biosynthesis anti-sigma factor FlgM -
  DIC78_RS13360 (DIC78_13385) flgN 2616099..2616581 (+) 483 WP_106019636.1 flagellar protein FlgN -
  DIC78_RS13365 (DIC78_13390) flgK 2616600..2618123 (+) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  DIC78_RS13370 (DIC78_13395) flgL 2618133..2619029 (+) 897 WP_106019635.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52784.87 Da        Isoelectric Point: 9.7189

>NTDB_id=291983 DIC78_RS13335 WP_106019638.1 2612811..2614205(+) (comFA) [Bacillus halotolerans strain ZB201702]
MQTKTSESNSPFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGKPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=291983 DIC78_RS13335 WP_106019638.1 2612811..2614205(+) (comFA) [Bacillus halotolerans strain ZB201702]
ATGCAGACTAAGACATCAGAATCGAACAGCCCATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAAGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATTGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.061

98.707

0.83

Multiple sequence alignment