Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DIC78_RS13325 Genome accession   NZ_CP029364
Coordinates   2611073..2611762 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain ZB201702     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2606073..2616762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS13305 (DIC78_13330) - 2606637..2607713 (+) 1077 WP_010332075.1 glycosyltransferase family 4 protein -
  DIC78_RS13310 (DIC78_13335) - 2607785..2608963 (-) 1179 WP_024123032.1 LCP family protein -
  DIC78_RS13315 (DIC78_13340) - 2608963..2609616 (-) 654 WP_044159478.1 YigZ family protein -
  DIC78_RS13320 (DIC78_13345) degS 2609833..2610990 (+) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  DIC78_RS13325 (DIC78_13350) degU 2611073..2611762 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DIC78_RS13330 (DIC78_13355) - 2611859..2612704 (+) 846 WP_106019639.1 DegV family protein -
  DIC78_RS13335 (DIC78_13360) comFA 2612811..2614205 (+) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  DIC78_RS13340 (DIC78_13365) - 2614262..2614558 (+) 297 WP_024123028.1 late competence development ComFB family protein -
  DIC78_RS13345 (DIC78_13370) comFC 2614522..2615244 (+) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  DIC78_RS13350 (DIC78_13375) - 2615318..2615737 (+) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  DIC78_RS13355 (DIC78_13380) flgM 2615817..2616083 (+) 267 WP_106019637.1 flagellar biosynthesis anti-sigma factor FlgM -
  DIC78_RS13360 (DIC78_13385) flgN 2616099..2616581 (+) 483 WP_106019636.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=291982 DIC78_RS13325 WP_003219701.1 2611073..2611762(+) (degU) [Bacillus halotolerans strain ZB201702]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=291982 DIC78_RS13325 WP_003219701.1 2611073..2611762(+) (degU) [Bacillus halotolerans strain ZB201702]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment