Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   DIW83_RS18505 Genome accession   NZ_CP029351
Coordinates   3816758..3817888 (+) Length   376 a.a.
NCBI ID   WP_031946889.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3811758..3822888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS18480 (DIW83_18480) - 3812019..3812225 (-) 207 WP_016803490.1 DUF4199 domain-containing protein -
  DIW83_RS18485 (DIW83_18485) - 3812279..3814393 (-) 2115 WP_016803491.1 TonB-dependent copper receptor -
  DIW83_RS18490 (DIW83_18490) - 3814465..3814893 (-) 429 WP_002054220.1 DUF2946 family protein -
  DIW83_RS18495 (DIW83_18495) def 3814930..3815460 (-) 531 WP_002054252.1 peptide deformylase -
  DIW83_RS18500 (DIW83_18500) tsaP 3815583..3816737 (+) 1155 WP_016803492.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DIW83_RS18505 (DIW83_18505) dprA 3816758..3817888 (+) 1131 WP_031946889.1 DNA-processing protein DprA Machinery gene
  DIW83_RS18510 (DIW83_18510) - 3817939..3818508 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  DIW83_RS18515 (DIW83_18515) - 3818900..3819820 (-) 921 WP_017398306.1 DMT family transporter -
  DIW83_RS18520 (DIW83_18520) - 3819926..3820579 (-) 654 WP_006581284.1 TetR/AcrR family transcriptional regulator -
  DIW83_RS18525 (DIW83_18525) - 3820714..3821928 (+) 1215 WP_004883889.1 MFS transporter -
  DIW83_RS18530 (DIW83_18530) - 3821950..3822714 (+) 765 WP_016803496.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41837.30 Da        Isoelectric Point: 6.6656

>NTDB_id=291919 DIW83_RS18505 WP_031946889.1 3816758..3817888(+) (dprA) [Acinetobacter nosocomialis strain NCTC 8102]
MLTQLSSHHYHTLKVWYLVQHSSVSFKKIIDYFGTCEKATQPDGLAKWSSLGLHANHLKRVNEFQTAQGQAQFEQLIQQV
QQHTDFILTLDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQSQNEETNTYTSEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVSVSKLTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=291919 DIW83_RS18505 WP_031946889.1 3816758..3817888(+) (dprA) [Acinetobacter nosocomialis strain NCTC 8102]
ATGCTCACCCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAGCACTCATCAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGTTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGAACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGTTAGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTGCAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTTGCCTACTACTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACTGGTACGGGCCTAGACACTACCTA
TCCAGCTCAAAATAAAAAACTGGCAGAACATATTTTGGCTCAGAACGGCGCCATTATTACTGAGTTTTTACCTGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTTAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCGCTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCCATTCCGGGCCATATTTA
TAGTGAGTTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACAAAGTCAAAATGAAGAAACTAATACGTATACTTCAGAAATTCCT
GAGCATTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTTTC
GGTTTCTAAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

94.947

100

0.949

  dprA Acinetobacter baumannii D1279779

94.947

100

0.949

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713


Multiple sequence alignment