Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DIW83_RS13050 Genome accession   NZ_CP029351
Coordinates   2662938..2663645 (+) Length   235 a.a.
NCBI ID   WP_000203217.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2657938..2668645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS13035 (DIW83_13035) - 2660757..2661563 (+) 807 WP_016804467.1 peptidoglycan DD-metalloendopeptidase family protein -
  DIW83_RS13040 (DIW83_13040) - 2661560..2661985 (-) 426 WP_016804468.1 GNAT family N-acetyltransferase -
  DIW83_RS13045 (DIW83_13045) - 2662077..2662499 (-) 423 WP_001195082.1 OsmC family protein -
  DIW83_RS19545 - 2662578..2662673 (-) 96 Protein_2532 hypothetical protein -
  DIW83_RS13050 (DIW83_13050) crp 2662938..2663645 (+) 708 WP_000203217.1 cAMP-activated global transcriptional regulator CRP Regulator
  DIW83_RS13055 (DIW83_13055) - 2663806..2664855 (+) 1050 WP_016804469.1 NADP(H)-dependent aldo-keto reductase -
  DIW83_RS13060 (DIW83_13060) - 2664913..2665695 (-) 783 WP_017398093.1 M48 family metallopeptidase -
  DIW83_RS13065 (DIW83_13065) - 2665811..2666128 (-) 318 WP_002156849.1 hypothetical protein -
  DIW83_RS13070 (DIW83_13070) - 2666255..2667574 (-) 1320 WP_002156866.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26567.18 Da        Isoelectric Point: 4.6625

>NTDB_id=291904 DIW83_RS13050 WP_000203217.1 2662938..2663645(+) (crp) [Acinetobacter nosocomialis strain NCTC 8102]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=291904 DIW83_RS13050 WP_000203217.1 2662938..2663645(+) (crp) [Acinetobacter nosocomialis strain NCTC 8102]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTTTGATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.574

100

0.996
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4

Multiple sequence alignment